Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002439 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.2e-47 192.6 85 100.0
CSS0002379 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.1e-24 116.3 52 98.1
CSS0034072 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 7.4e-24 113.6 51 98.0
CSS0013113 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 4.8e-23 110.9 51 94.1
CSS0025411 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.5e-21 105.9 53 90.6
GSVIVG01025280001 Vitis vinifera HOM05D000561 ORTHO05D000514 7.9e-18 93.6 51 80.4
Rhsim13G0222000 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.0e-17 91.7 51 74.5
CSS0022653 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 3.9e-17 91.3 55 81.8
Nn2g15468 Nelumbo nucifera HOM05D000561 ORTHO05D000514 3.9e-17 91.3 47 83.0
TAR636G2461 Trochodendron aralioides HOM05D000561 ORTHO05D000514 6.7e-17 90.5 48 81.2
MBI01_g18892_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D000514 2.5e-16 88.6 51 74.5
ATR0605G067 Amborella trichopoda HOM05D000561 ORTHO05D000514 7.4e-16 87.0 46 80.4
Glyma.13G340200 Glycine max HOM05D000561 ORTHO05D000514 7.4e-16 87.0 51 74.5
HanXRQChr13g0405951 Helianthus annuus HOM05D000561 ORTHO05D000514 7.4e-16 87.0 47 80.9
Hma1.2p1_0606F.1_g188060 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 9.7e-16 86.7 51 74.5
Gohir.A07G124500 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.3e-15 86.3 51 74.5
Gohir.D07G128800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.3e-15 86.3 51 74.5
Gorai.001G139100 Gossypium raimondii HOM05D000561 ORTHO05D000514 1.3e-15 86.3 51 74.5
Aqoxy1G00237 Aquilegia oxysepala HOM05D000561 ORTHO05D000514 1.6e-15 85.9 51 68.6
Duzib168G0910 Durio zibethinus HOM05D000561 ORTHO05D000514 1.6e-15 85.9 51 76.5
Thecc.09G232000 Theobroma cacao HOM05D000561 ORTHO05D000514 1.6e-15 85.9 51 76.5
Glyma.12G057300 Glycine max HOM05D000561 ORTHO05D000514 2.8e-15 85.1 51 72.5
ECA248G2811 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.7e-15 84.7 51 70.6
Gohir.A08G013600 Gossypium hirsutum HOM05D000561 ORTHO05D000514 6.3e-15 84.0 51 72.5
Gohir.D08G024100 Gossypium hirsutum HOM05D000561 ORTHO05D000514 6.3e-15 84.0 51 72.5
Gorai.004G019500 Gossypium raimondii HOM05D000561 ORTHO05D000514 6.3e-15 84.0 51 72.5
TWI34G1960 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 8.2e-15 83.6 50 76.0
Cc02_g33880 Coffea canephora HOM05D000561 ORTHO05D000514 1.1e-14 83.2 51 70.6
COL.COLO4_24888 Corchorus olitorius HOM05D000561 ORTHO05D000514 1.1e-14 83.2 51 72.5
MD11G1197600 Malus domestica HOM05D000561 ORTHO05D000514 1.1e-14 83.2 51 70.6
Glyma.15G034200 Glycine max HOM05D000561 ORTHO05D000514 1.4e-14 82.8 51 70.6
Hund07519 Selenicereus undatus HOM05D000561 ORTHO05D000514 1.4e-14 82.8 51 74.5
Cpa.g.sc84.66 Carica papaya HOM05D000561 ORTHO05D000514 1.8e-14 82.4 51 70.6
Solyc11g065880.2 Solanum lycopersicum HOM05D000561 ORTHO05D000514 2.4e-14 82.0 51 72.5
Sopen11g025610 Solanum pennellii HOM05D000561 ORTHO05D000514 2.4e-14 82.0 51 72.5
Prupe.5G028700 Prunus persica HOM05D000561 ORTHO05D000514 3.1e-14 81.6 51 70.6
QL01p004975 Quercus lobata HOM05D000561 ORTHO05D000514 3.1e-14 81.6 50 72.0
Lsat_1_v5_gn_1_66300 Lactuca sativa HOM05D000561 ORTHO05D000514 4.1e-14 81.3 49 75.5
Actinidia16326 Actinidia chinensis HOM05D000561 ORTHO05D000514 5.3e-14 80.9 51 74.5
MD03G1176800 Malus domestica HOM05D000561 ORTHO05D000514 5.3e-14 80.9 52 71.2
PGSC0003DMG400007361 Solanum tuberosum HOM05D000561 ORTHO05D000514 5.3e-14 80.9 51 70.6
Glyma.11G133200 Glycine max HOM05D000561 ORTHO05D000514 6.9e-14 80.5 51 68.6
Eucgr.J00778 Eucalyptus grandis HOM05D000561 ORTHO05D000514 1.5e-13 79.3 48 70.8
PSO384G1656 Papaver somniferum HOM05D000561 ORTHO05D000514 4.5e-13 77.8 50 64.0
Phvul.L009343 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 4.5e-13 77.8 51 68.6
Actinidia06901 Actinidia chinensis HOM05D000561 ORTHO05D000514 5.9e-13 77.4 51 72.5
PSO339G4568 Papaver somniferum HOM05D000561 ORTHO05D000514 5.9e-13 77.4 49 65.3
EL10Ac4g10266 Beta vulgaris HOM05D000561 ORTHO05D000514 7.7e-13 77.0 51 68.6
EL10Ac4g10282 Beta vulgaris HOM05D000561 ORTHO05D000514 1.7e-12 75.9 51 66.7
Lj3g0003681 Lotus japonicus HOM05D000561 ORTHO05D000514 2.9e-12 75.1 51 62.7
Manes.14G001900 Manihot esculenta HOM05D000561 ORTHO05D000514 2.9e-12 75.1 51 68.6
CiPaw.14G119600 Carya illinoinensis HOM05D000561 ORTHO05D000514 3.8e-12 74.7 45 73.3
arahy.Tifrunner.gnm1.ann1.Z4F097 Arachis hypogaea HOM05D000561 ORTHO05D000514 5.0e-12 74.3 43 76.7
Aa31LG11G5050 Aethionema arabicum HOM05D000561 ORTHO05D000514 6.5e-12 73.9 42 81.0
CARHR193610 Cardamine hirsuta HOM05D000561 ORTHO05D000514 6.5e-12 73.9 45 77.8
Cfa009761 Carpinus fangiana HOM05D000561 ORTHO05D000514 8.5e-12 73.6 51 66.7
Oeu001477.2 Olea europaea HOM05D000003 ORTHO05D000514 8.5e-12 73.6 52 65.4
THA.LOC104811163 Tarenaya hassleriana HOM05D000561 ORTHO05D000514 8.5e-12 73.6 45 73.3
AL6G30840 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 1.1e-11 73.2 45 77.8
MELO3C005531.2 Cucumis melo HOM05D000561 ORTHO05D000514 1.1e-11 73.2 51 68.6
Migut.D00595 Erythranthe guttata HOM05D000561 ORTHO05D000514 1.1e-11 73.2 51 64.7
Lj3g0012879 Lotus japonicus HOM05D000561 ORTHO05D000514 1.4e-11 72.8 52 63.5
Ciclev10015576m.g Citrus clementina HOM05D000561 ORTHO05D000514 1.9e-11 72.4 51 64.7
CsaV3_5G004230 Cucumis sativus L. HOM05D000561 ORTHO05D000514 3.2e-11 71.6 51 66.7
Potri.009G054400 Populus trichocarpa HOM05D000561 ORTHO05D000514 3.2e-11 71.6 51 66.7
Sabra09G0039700 Salix brachista HOM05D000561 ORTHO05D000514 3.2e-11 71.6 51 66.7
VMungo1127G1920 Vigna mungo HOM05D000561 ORTHO05D000514 3.2e-11 71.6 50 62.0
CDE10G0196 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.2e-11 71.2 39 74.4
VMungo1080G0863 Vigna mungo HOM05D000561 ORTHO05D000514 5.5e-11 70.9 50 64.0
Carub.0006s1769 Capsella rubella HOM05D000561 ORTHO05D000514 9.4e-11 70.1 45 75.6
arahy.Tifrunner.gnm1.ann1.GE7Z65 Arachis hypogaea HOM05D000561 ORTHO05D000514 2.1e-10 68.9 42 73.8
AUR62000109 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.1e-10 68.9 46 67.4
Thhalv10013617m.g Eutrema salsugineum HOM05D000561 ORTHO05D000514 2.1e-10 68.9 42 81.0
AUR62019286 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.7e-10 68.6 46 67.4
PGR119G1727 Punica granatum HOM05D000561 ORTHO05D000514 2.7e-10 68.6 51 62.7
AT5G19350 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 4.6e-10 67.8 45 71.1
Ca_01295_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 4.6e-10 67.8 43 69.8
Lalb_Chr01g0003351 Lupinus albus HOM05D000561 ORTHO05D000514 6.1e-10 67.4 51 64.7
C09p56930 Brassica napus HOM05D000561 ORTHO05D000514 7.9e-10 67.0 45 73.3
Zm00001eb005630 Zea mays HOM05D000561 ORTHO05D000514 7.9e-10 67.0 46 73.9
A10p20330 Brassica napus HOM05D000561 ORTHO05D000514 1.0e-09 66.6 45 71.1
BraA10t44104Z Brassica rapa HOM05D000561 ORTHO05D000514 1.0e-09 66.6 45 71.1
Nn1g03553 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.0e-09 66.6 52 63.5
SalBow2G0499 Salvia bowleyana HOM05D000561 ORTHO05D000514 1.0e-09 66.6 51 62.7
ClCG01G004050 Citrullus lanatus HOM05D000561 ORTHO05D000514 1.4e-09 66.2 40 75.0
BcaB01g04865 Brassica carinata HOM05D000561 ORTHO05D000514 1.8e-09 65.9 45 71.1
BcaNung07025 Brassica carinata HOM05D000561 ORTHO05D000514 1.8e-09 65.9 45 71.1
Sp6g25060 Schrenkiella parvula HOM05D000561 ORTHO05D000514 2.3e-09 65.5 42 78.6
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 3.0e-09 65.1 47 61.7
BolC9t58547H Brassica oleracea HOM05D000561 ORTHO05D000514 3.9e-09 64.7 42 73.8
Mapoly0013s0011 Marchantia polymorpha HOM05D000561 ORTHO05D000514 3.9e-09 64.7 51 58.8
CANSAT54G1581 Cannabis sativa HOM05D000561 ORTHO05D000514 5.1e-09 64.3 46 65.2
SEGI_02787 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 5.1e-09 64.3 51 62.7
SEGI_29644 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 5.1e-09 64.3 44 65.9
TPR.G6890 Trifolium pratense HOM05D000561 ORTHO05D000514 5.1e-09 64.3 47 61.7
BcaB01g05142 Brassica carinata HOM05D000561 ORTHO05D000514 1.5e-08 62.8 42 71.4
A03p09450 Brassica napus HOM05D000561 ORTHO05D000514 1.5e-08 62.8 42 71.4
C03p11030 Brassica napus HOM05D000561 ORTHO05D000514 1.5e-08 62.8 42 71.4
BolC3t13572H Brassica oleracea HOM05D000561 ORTHO05D000514 1.5e-08 62.8 42 71.4
BraA03t10263Z Brassica rapa HOM05D000561 ORTHO05D000514 1.5e-08 62.8 42 71.4
DCAR_029947 Daucus carota HOM05D000561 ORTHO05D000514 1.5e-08 62.8 51 52.9
Os03g0174100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 1.9e-08 62.4 46 69.6
Psat5g286480 Pisum sativum HOM05D000561 ORTHO05D000514 3.3e-08 61.6 44 63.6
Duzib150G0013 Durio zibethinus HOM05D000561 ORTHO05D000514 4.3e-08 61.2 46 63.0
MSTRG.21383 Avicennia marina HOM05D000561 ORTHO05D000514 5.7e-08 60.8 51 58.8
Medtr2g097960 Medicago truncatula HOM05D000561 ORTHO05D000514 5.7e-08 60.8 44 63.6
HPP92_005831 Vanilla planifolia HOM05D000561 ORTHO05D000514 5.7e-08 60.8 42 64.3
HPP92_005856 Vanilla planifolia HOM05D000561 ORTHO05D000514 5.7e-08 60.8 42 64.3
HPP92_005912 Vanilla planifolia HOM05D000561 ORTHO05D000514 5.7e-08 60.8 42 64.3
Manes.03G128501 Manihot esculenta HOM05D000561 ORTHO05D000514 9.7e-08 60.1 40 65.0
ATR0752G101 Amborella trichopoda HOM05D000561 ORTHO05D000514 1.3e-07 59.7 48 60.4
Sc16g0011530 Simmondsia chinensis HOM05D000561 ORTHO05D000514 1.3e-07 59.7 51 49.0
CDE06G2223 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.7e-07 59.3 39 64.1
Sed0011306 Sechium edule HOM05D000561 ORTHO05D000514 2.8e-07 58.5 44 65.9
CDE05G1060 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.8e-07 57.8 52 53.8
Manes.15G072700 Manihot esculenta HOM05D000561 ORTHO05D000514 4.8e-07 57.8 40 62.5
MBI02_g22113_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D000514 6.3e-07 57.4 51 54.9
CDE02G4501 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.4e-06 56.2 41 61.0
CDE05G3198 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.4e-06 56.2 41 61.0
FAN19G1629 Fragaria x ananassa HOM05D000561 ORTHO05D000514 1.4e-06 56.2 46 54.3
FvH4_1g30440 Fragaria vesca HOM05D000561 ORTHO05D000514 1.8e-06 55.8 51 49.0
Gohir.D13G143300 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.8e-06 55.8 47 57.4
Os08g0190200 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 3.1e-06 55.1 43 55.8
RcHm_v2.0_Chr3g0491021 Rosa chinensis HOM05D000561 ORTHO05D000514 5.3e-06 54.3 46 54.3
HPP92_016294 Vanilla planifolia HOM05D000561 ORTHO05D000514 5.3e-06 54.3 43 58.1
HPP92_016314 Vanilla planifolia HOM05D000561 ORTHO05D000514 9.1e-06 53.5 43 58.1


User provided reference genes

Program Settings