Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-93 346.3 178 100.0
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.3e-57 226.9 277 53.1
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.3e-57 226.9 277 52.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.3e-54 216.9 273 50.9
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.6e-52 209.9 272 50.0
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.0e-51 205.7 275 47.6
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.9e-51 205.3 273 48.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 5.1e-51 204.9 272 48.2
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.1e-50 203.8 272 48.2
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-50 203.0 273 49.1
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-50 203.0 273 49.1
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.5e-50 202.6 272 48.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.3e-50 202.2 270 47.8
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.3e-50 201.8 270 47.4
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.3e-50 201.8 270 47.4
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 7.4e-50 201.1 272 47.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 7.4e-50 201.1 272 47.4
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 9.6e-50 200.7 276 47.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.3e-49 200.3 272 47.1
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.3e-49 200.3 270 47.0
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-49 200.3 270 47.0
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.6e-49 199.9 275 46.2
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.8e-49 199.1 272 47.1
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.2e-49 198.0 272 46.7
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 8.1e-49 197.6 272 47.1
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.4e-48 196.8 271 46.1
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.8e-48 196.4 272 46.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.8e-48 196.4 272 46.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.1e-48 195.7 266 47.0
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 3.1e-48 195.7 275 46.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 4.0e-48 195.3 272 46.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 4.0e-48 195.3 272 46.3
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 6.9e-48 194.5 274 45.6
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 6.9e-48 194.5 272 46.0
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 9.0e-48 194.1 272 46.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.0e-48 194.1 272 46.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.2e-47 193.7 272 46.3
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.0e-47 193.0 275 46.2
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 3.4e-47 192.2 258 47.3
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.4e-47 192.2 274 44.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 4.5e-47 191.8 270 45.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 5.8e-47 191.4 273 44.7
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.8e-47 191.4 270 45.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 9.9e-47 190.7 272 46.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 9.9e-47 190.7 272 45.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.3e-46 190.3 272 44.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.7e-46 189.9 270 44.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.2e-46 189.5 272 45.2
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.2e-46 189.5 272 44.5
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.8e-46 188.7 274 44.2
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 4.9e-46 188.3 270 45.2
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 6.4e-46 188.0 275 45.1
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.4e-46 188.0 274 44.5
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 6.4e-46 188.0 273 43.2
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 8.4e-46 187.6 272 45.6
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.4e-45 186.8 306 42.2
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.4e-45 186.0 270 44.4
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.4e-45 186.0 272 44.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 3.2e-45 185.7 270 44.4
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.2e-45 185.3 271 45.0
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 4.2e-45 185.3 270 44.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 5.5e-45 184.9 274 44.9
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 7.1e-45 184.5 271 45.0
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-44 183.7 270 43.3
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.2e-44 183.7 270 44.8
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.2e-44 183.7 262 45.8
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-44 183.3 271 45.0
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.6e-44 183.3 271 45.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.6e-44 183.3 270 44.4
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.1e-44 183.0 271 45.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.1e-44 183.0 270 44.4
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.1e-44 183.0 271 45.0
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.7e-44 182.6 270 44.1
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 3.5e-44 182.2 271 44.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 3.5e-44 182.2 244 48.0
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 4.6e-44 181.8 271 44.6
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 4.6e-44 181.8 270 43.7
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.0e-44 181.4 278 43.9
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 6.0e-44 181.4 308 40.9
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 7.9e-44 181.0 278 43.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 7.9e-44 181.0 271 44.6
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.0e-43 180.6 276 44.2
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.3e-43 180.3 271 44.6
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.3e-43 180.3 270 43.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.5e-42 176.8 267 43.1
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 7.4e-42 174.5 272 40.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.4e-42 174.5 270 42.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 4.8e-41 171.8 263 43.7
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 6.2e-41 171.4 266 42.1
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 6.2e-41 171.4 270 42.2
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 6.2e-41 171.4 270 42.2
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.4e-40 170.2 258 43.4
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.4e-40 170.2 272 40.1
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.8e-40 169.9 257 44.7
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.8e-40 169.9 227 49.3
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 3.1e-40 169.1 270 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.7e-38 163.3 270 38.1
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.5e-38 161.4 267 40.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 6.5e-38 161.4 242 43.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.4e-37 160.2 262 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.2e-37 159.1 270 37.0
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.2e-36 157.1 270 37.0
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.7e-36 156.0 244 41.8
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 3.5e-36 155.6 300 37.0
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 4.6e-36 155.2 245 41.6
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.3e-35 152.9 270 38.5
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.0e-35 152.5 225 44.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.7e-35 151.4 165 52.7
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.5e-34 149.4 383 33.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.8e-33 145.2 236 45.3
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-31 140.6 239 41.4
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 5.0e-30 135.2 239 41.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.1e-29 134.0 215 41.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.9e-29 133.3 239 41.0
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.7e-28 129.4 103 63.1
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 4.6e-28 128.6 190 45.3
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.0e-27 127.5 170 44.1
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.8e-27 126.7 271 33.2
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 3.0e-27 125.9 200 43.0
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 3.9e-27 125.6 225 40.0
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 3.9e-27 125.6 157 49.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 6.7e-27 124.8 209 41.6
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 4.3e-26 122.1 275 34.5
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.7e-25 120.2 103 60.2
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.7e-25 120.2 267 33.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 3.1e-24 115.9 267 30.0
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.7e-22 110.2 89 65.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.4e-19 100.5 135 48.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 8.8e-19 97.8 183 39.9
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-18 97.4 206 35.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.5e-18 97.1 101 45.5
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 3.3e-18 95.9 139 46.8
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 7.7e-15 84.7 175 37.7
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.2e-14 83.2 77 59.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 3.8e-14 82.4 276 26.4
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 5.0e-14 82.0 97 50.5
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.7e-12 76.3 73 52.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.4e-10 68.2 121 38.8
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 7.4e-10 68.2 109 44.0
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 8.2e-09 64.7 99 45.5
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 3.1e-08 62.8 95 46.3
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.7e-06 57.0 55 56.4


User provided reference genes

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