Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.1e-270 936.0 462 100.0
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 1.9e-206 722.6 445 80.2
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 1.5e-190 669.8 452 72.1
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 8.3e-178 627.5 449 68.6
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 7.2e-174 614.4 449 67.5
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 1.7e-167 593.2 453 65.6
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 3.1e-156 555.8 459 61.2
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 8.9e-156 554.3 409 71.4
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 5.8e-155 551.6 451 61.9
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 1.4e-153 547.0 418 66.7
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 2.4e-153 546.2 460 61.3
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 5.4e-153 545.0 442 61.5
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 5.4e-153 545.0 431 63.8
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 7.0e-153 544.7 449 62.8
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.6e-152 543.5 453 61.4
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 2.0e-152 543.1 450 62.2
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 7.8e-152 541.2 460 61.7
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.0e-151 540.8 441 61.9
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 5.0e-151 538.5 450 61.1
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 6.6e-151 538.1 440 62.7
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 1.1e-150 537.3 447 61.7
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.5e-150 537.0 446 61.7
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.5e-150 537.0 451 60.5
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 2.5e-150 536.2 447 61.5
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.3e-150 535.4 450 61.3
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 7.3e-150 534.6 405 65.7
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.2e-149 533.9 451 60.5
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 3.6e-149 532.3 450 60.9
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 3.6e-149 532.3 456 60.3
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.8e-148 530.0 437 61.6
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.1e-148 529.3 441 61.9
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 3.4e-147 525.8 448 60.0
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.4e-147 525.4 443 59.1
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.8e-147 525.0 431 61.7
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.3e-146 523.9 452 59.7
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 4.9e-146 521.9 445 60.2
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 6.4e-146 521.5 448 59.8
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 1.9e-145 520.0 445 59.8
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 3.5e-144 515.8 434 59.0
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 4.6e-144 515.4 401 66.6
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 3.9e-143 512.3 408 63.0
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 6.6e-143 511.5 413 60.3
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 8.6e-143 511.1 449 58.1
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 5.6e-142 508.4 453 57.6
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 1.2e-141 507.3 421 61.0
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 4.7e-141 505.4 444 58.1
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 6.2e-141 505.0 416 59.6
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 8.1e-141 504.6 532 52.8
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.4e-140 503.8 445 59.3
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 6.8e-140 501.5 464 55.8
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 8.9e-140 501.1 449 58.4
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 1.2e-139 500.7 410 60.2
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 3.4e-139 499.2 417 59.7
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 4.4e-139 498.8 407 60.2
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 7.6e-139 498.0 449 57.9
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 2.9e-138 496.1 445 57.8
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 3.2e-137 492.7 449 56.1
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 5.4e-137 491.9 427 58.5
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 9.2e-137 491.1 352 66.8
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 2.1e-136 490.0 443 57.8
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 5.1e-135 485.3 435 56.6
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 2.5e-134 483.0 440 58.2
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 7.3e-134 481.5 372 64.2
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 1.6e-133 480.3 409 60.4
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.6e-133 480.3 380 64.2
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 2.1e-133 479.9 453 55.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.8e-133 479.6 421 58.7
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 8.1e-133 478.0 413 58.4
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 1.1e-132 477.6 425 56.9
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 5.2e-132 475.3 402 59.5
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.2e-131 474.2 398 61.3
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 3.2e-129 466.1 402 58.7
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 7.1e-129 464.9 413 57.1
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 9.3e-129 464.5 424 56.8
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 9.3e-129 464.5 413 56.4
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.2e-128 464.2 398 60.3
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 4.6e-128 462.2 411 57.9
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.3e-127 460.7 398 59.5
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 1.7e-127 460.3 394 60.4
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 3.3e-126 456.1 394 59.1
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 7.3e-126 454.9 399 59.9
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 2.1e-125 453.4 423 55.6
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.1e-124 449.5 437 55.6
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 2.1e-117 426.8 395 56.7
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 4.6e-112 409.1 411 51.1
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 7.4e-110 401.7 394 54.1
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 1.2e-104 384.4 301 65.1
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 6.7e-103 378.6 412 49.5
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.1e-100 371.3 354 54.2
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 7.6e-99 365.2 412 46.1
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 6.1e-96 355.5 279 60.9
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 3.1e-92 343.2 293 60.8
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.2e-90 337.0 352 49.7
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 3.2e-89 333.2 328 54.9
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.4e-83 313.2 332 49.1
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 5.0e-82 309.3 265 59.6
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 5.0e-82 309.3 279 54.8
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.0e-63 246.9 295 46.4
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.6e-62 243.8 310 44.5
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 8.3e-61 238.8 217 56.7
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.4e-60 238.0 412 36.7
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 5.9e-59 232.6 432 35.2
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 2.1e-56 224.2 239 49.8
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 6.3e-53 212.6 181 54.1
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.0e-47 193.7 242 45.0
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 8.9e-47 192.2 151 60.9
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.4e-46 189.9 155 61.3
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 1.7e-45 188.0 218 46.3
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.9e-45 187.2 146 61.6
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.4e-44 183.0 149 60.4
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.3e-42 178.3 119 75.6
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.3e-42 177.6 134 68.7
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.6e-40 170.2 276 38.4
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 1.4e-31 141.7 129 56.6
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.4e-28 129.8 115 56.5
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.0e-27 126.3 112 56.2
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.2e-19 102.1 338 25.7
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 1.6e-19 101.7 110 52.7
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.1e-19 101.3 333 27.3
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 4.6e-19 100.1 327 25.7
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.0e-18 99.0 335 24.8
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.7e-18 98.2 333 26.4
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.7e-18 98.2 333 23.4
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.3e-18 97.8 339 26.3
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 3.0e-18 97.4 331 26.9
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.9e-18 97.1 335 24.5
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.6e-18 96.3 333 26.7
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 6.6e-18 96.3 333 25.8
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 6.6e-18 96.3 332 24.7
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 8.7e-18 95.9 333 25.8
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-17 95.5 353 26.3
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.5e-17 94.4 337 24.9
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.3e-17 94.0 367 27.0
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.3e-17 93.6 348 24.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 4.3e-17 93.6 363 23.7
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 4.3e-17 93.6 332 24.7
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 5.6e-17 93.2 337 26.7
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.3e-17 92.8 331 23.9
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.2e-16 92.0 333 24.0
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.6e-16 91.7 329 29.2
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 1.6e-16 91.7 332 24.1
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 2.1e-16 91.3 331 25.4
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.1e-16 91.3 340 25.9
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.6e-16 90.5 336 26.2
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-15 89.0 340 25.6
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.4e-15 88.6 334 25.1
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.8e-15 88.2 332 23.2
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.4e-15 87.8 336 26.2
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.4e-15 87.8 332 23.2
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 4.0e-15 87.0 333 24.3
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 5.2e-15 86.7 321 24.6
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.9e-15 86.3 333 23.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 6.9e-15 86.3 338 24.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 9.0e-15 85.9 333 24.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.2e-14 85.5 333 25.2
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.0e-14 84.7 346 26.0
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.6e-14 84.3 333 24.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 7.6e-14 82.8 341 24.9
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.9e-13 80.9 327 24.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 8.4e-13 79.3 334 24.9
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 4.2e-12 77.0 343 24.5
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 2.7e-11 74.3 327 22.6
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 6.6e-10 69.7 329 22.8
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 1.5e-09 68.6 67 49.3
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 7.3e-09 66.2 339 23.6
Actinidia37455 Actinidia chinensis HOM05D006855 ORTHO05D055804 2.8e-08 64.3 42 71.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.5e-06 58.5 44 56.8


User provided reference genes

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