Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-53 212.2 102 100.0
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.9e-51 204.9 102 97.1
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.9e-51 204.9 102 97.1
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.8e-51 204.5 102 96.1
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.5e-51 203.8 102 96.1
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.4e-50 202.6 102 96.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-48 196.4 99 96.0
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.4e-48 196.1 103 94.2
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.2e-23 113.2 58 96.6
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 7.5e-23 110.5 58 93.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 2.3e-16 89.0 57 84.2
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 6.8e-16 87.4 58 77.6
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.5e-15 86.3 58 74.1
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 5.8e-15 84.3 58 74.1
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 5.8e-15 84.3 64 68.8
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 9.8e-15 83.6 75 61.3
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.3e-14 83.2 57 70.2
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.7e-14 82.8 58 72.4
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.2e-14 82.4 58 70.7
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 2.2e-14 82.4 85 56.5
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.7e-14 81.6 57 73.7
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 3.7e-14 81.6 75 58.7
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 3.7e-14 81.6 75 58.7
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.7e-14 81.6 75 58.7
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 4.9e-14 81.3 57 68.4
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 4.9e-14 81.3 58 72.4
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 6.4e-14 80.9 64 65.6
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 6.4e-14 80.9 64 67.2
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 8.3e-14 80.5 58 70.7
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 8.3e-14 80.5 58 72.4
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.1e-13 80.1 59 67.8
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 1.1e-13 80.1 57 71.9
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.4e-13 79.7 58 69.0
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.4e-13 79.7 58 69.0
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.4e-13 79.7 58 72.4
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.4e-13 79.7 58 72.4
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.4e-13 79.7 57 70.2
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 1.4e-13 79.7 58 69.0
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.8e-13 79.3 85 51.8
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.8e-13 79.3 64 65.6
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.8e-13 79.3 57 71.9
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.2e-13 78.6 57 63.2
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 3.2e-13 78.6 58 67.2
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.2e-13 78.6 57 73.7
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 4.1e-13 78.2 58 69.0
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 5.4e-13 77.8 57 61.4
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 5.4e-13 77.8 70 58.6
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 5.4e-13 77.8 58 67.2
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 7.0e-13 77.4 57 68.4
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 9.2e-13 77.0 58 62.1
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 9.2e-13 77.0 58 62.1
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 9.2e-13 77.0 58 65.5
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.2e-12 76.6 64 62.5
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.2e-12 76.6 57 70.2
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.2e-12 76.6 58 65.5
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.2e-12 76.6 58 65.5
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.6e-12 76.3 58 69.0
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.6e-12 76.3 58 63.8
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 2.0e-12 75.9 58 62.1
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.0e-12 75.9 57 63.2
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 2.7e-12 75.5 57 64.9
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 2.7e-12 75.5 58 65.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.7e-12 75.5 58 67.2
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.5e-12 75.1 58 63.8
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.6e-12 74.7 58 65.5
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 4.6e-12 74.7 58 63.8
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 6.0e-12 74.3 58 63.8
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 7.8e-12 73.9 58 62.1
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 7.8e-12 73.9 57 66.7
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 7.8e-12 73.9 86 46.5
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 7.8e-12 73.9 58 62.1
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.0e-11 73.6 58 65.5
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.0e-11 73.6 58 63.8
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.0e-11 73.6 58 60.3
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.3e-11 73.2 58 63.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.3e-11 73.2 57 68.4
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.3e-11 73.2 57 68.4
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.7e-11 72.8 58 63.8
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.7e-11 72.8 58 63.8
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.7e-11 72.8 57 64.9
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 2.3e-11 72.4 58 62.1
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 3.9e-11 71.6 58 60.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 5.0e-11 71.2 58 63.8
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 5.0e-11 71.2 57 64.9
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 6.6e-11 70.9 58 62.1
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 6.6e-11 70.9 58 63.8
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 6.6e-11 70.9 58 63.8
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 6.6e-11 70.9 58 63.8
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 6.6e-11 70.9 58 63.8
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 6.6e-11 70.9 88 48.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.1e-10 70.1 58 63.8
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.1e-10 70.1 58 63.8
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.1e-10 70.1 58 63.8
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.1e-10 70.1 58 62.1
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.1e-10 70.1 58 58.6
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.5e-10 69.7 64 54.7
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.9e-10 69.3 57 61.4
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.5e-10 68.9 58 56.9
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 3.3e-10 68.6 57 66.7
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 4.3e-10 68.2 58 63.8
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 5.6e-10 67.8 57 64.9
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 5.6e-10 67.8 65 50.8
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 7.3e-10 67.4 57 64.9
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 3.6e-09 65.1 57 63.2
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 3.6e-09 65.1 58 53.4
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.3e-08 62.4 58 55.2
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 4.0e-08 61.6 58 51.7
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 6.8e-08 60.8 86 46.5
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.0e-07 59.3 40 72.5
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 3.7e-06 55.1 43 65.1


User provided reference genes

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