Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002399 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D000235 2.7e-74 282.0 146 100.0
CSS0016917 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D000235 5.1e-65 251.1 161 84.5
CSS0037430 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D112262 6.7e-41 171.0 126 77.8
CSS0001635 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 9.4e-19 97.4 56 89.3
Dinv07057 Davidia involucrata HOM05D000364 ORTHO05D000235 9.7e-16 87.4 56 75.0
Actinidia27112 Actinidia chinensis HOM05D000364 ORTHO05D000235 1.3e-15 87.0 56 75.0
vmacro00699 Vaccinium macrocarpon HOM05D000364 ORTHO05D000235 4.8e-15 85.1 56 71.4
ECA248G0252 Erigeron canadensis HOM05D000364 ORTHO05D000235 6.3e-15 84.7 56 75.0
Lsat_1_v5_gn_1_74780 Lactuca sativa HOM05D000364 ORTHO05D000235 8.2e-15 84.3 56 73.2
Glyma.02G137400 Glycine max HOM05D000364 ORTHO05D000235 2.4e-14 82.8 65 66.2
Dinv33204 Davidia involucrata HOM05D000364 ORTHO05D000235 3.1e-14 82.4 56 71.4
Glyma.07G208000 Glycine max HOM05D000364 ORTHO05D000235 4.1e-14 82.0 65 66.2
Rhsim02G0084200 Rhododendron simsii HOM05D000364 ORTHO05D000235 5.3e-14 81.6 56 73.2
Prupe.1G207100 Prunus persica HOM05D000364 ORTHO05D000235 7.0e-14 81.3 64 65.6
Hma1.2p1_0150F.1_g066830 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 9.1e-14 80.9 56 69.6
Phvul.003G296500 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 1.2e-13 80.5 65 64.6
VMungo0251G2434 Vigna mungo HOM05D000364 ORTHO05D000235 1.2e-13 80.5 65 64.6
Atru.chr4.1418 Acer truncatum HOM05D000364 ORTHO05D000235 1.6e-13 80.1 64 65.6
Manes.11G129300 Manihot esculenta HOM05D000364 ORTHO05D000235 2.0e-13 79.7 56 73.2
Ciclev10022741m.g Citrus clementina HOM05D000364 ORTHO05D000235 3.5e-13 79.0 66 63.6
CsaV3_4G002800 Cucumis sativus L. HOM05D000364 ORTHO05D000235 3.5e-13 79.0 67 61.2
TWI15G1181 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 3.5e-13 79.0 56 71.4
FAN07G2907 Fragaria x ananassa HOM05D000364 ORTHO05D000235 4.5e-13 78.6 64 64.1
Cc03_g14090 Coffea canephora HOM05D000364 ORTHO05D000235 5.9e-13 78.2 56 66.1
Oeu016611.2 Olea europaea HOM05D000364 ORTHO05D000235 5.9e-13 78.2 56 66.1
RcHm_v2.0_Chr4g0405961 Rosa chinensis HOM05D000364 ORTHO05D000235 5.9e-13 78.2 64 62.5
MELO3C017761.2 Cucumis melo HOM05D000364 ORTHO05D000235 7.7e-13 77.8 68 58.8
HanXRQChr11g0343171 Helianthus annuus HOM05D000364 ORTHO05D000235 7.7e-13 77.8 56 69.6
GSVIVG01038142001 Vitis vinifera HOM05D000364 ORTHO05D000235 7.7e-13 77.8 56 66.1
FvH4_4g10460 Fragaria vesca HOM05D000364 ORTHO05D000235 1.0e-12 77.4 64 62.5
FAN12G2348 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.0e-12 77.4 64 62.5
FAN12G3809 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.0e-12 77.4 64 62.5
HanXRQChr01g0023161 Helianthus annuus HOM05D000364 ORTHO05D000235 1.0e-12 77.4 103 47.6
TWI63G0752 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 1.0e-12 77.4 55 72.7
Manes.04G035800 Manihot esculenta HOM05D000364 ORTHO05D000235 1.7e-12 76.6 56 69.6
FAN17G1593 Fragaria x ananassa HOM05D000364 ORTHO05D000235 2.9e-12 75.9 64 62.5
FAN22G0452 Fragaria x ananassa HOM05D000364 ORTHO05D000235 2.9e-12 75.9 64 62.5
Lj6A166T9 Lonicera japonica HOM05D000364 ORTHO05D000235 2.9e-12 75.9 58 63.8
arahy.Tifrunner.gnm1.ann1.5MB0W9 Arachis hypogaea HOM05D000364 ORTHO05D000235 3.8e-12 75.5 66 63.6
Potri.013G126800 Populus trichocarpa HOM05D000364 ORTHO05D000235 3.8e-12 75.5 56 67.9
Sabra13G0105900 Salix brachista HOM05D000364 ORTHO05D000235 3.8e-12 75.5 56 67.9
arahy.Tifrunner.gnm1.ann1.VF7XEH Arachis hypogaea HOM05D000364 ORTHO05D000235 5.0e-12 75.1 65 64.6
arahy.Tifrunner.gnm1.ann1.X9QM54 Arachis hypogaea HOM05D000364 ORTHO05D000235 5.0e-12 75.1 65 64.6
COL.COLO4_08139 Corchorus olitorius HOM05D000364 ORTHO05D000235 6.5e-12 74.7 56 67.9
MD04G1049000 Malus domestica HOM05D000364 ORTHO05D000235 8.5e-12 74.3 56 66.1
Potri.019G112000 Populus trichocarpa HOM05D000364 ORTHO05D000235 8.5e-12 74.3 56 67.9
QL10p055765 Quercus lobata HOM05D000364 ORTHO05D000235 1.1e-11 73.9 64 64.1
Migut.N03067 Erythranthe guttata HOM05D000364 ORTHO05D000235 1.5e-11 73.6 61 57.4
Lj4g0009128 Lotus japonicus HOM05D000364 ORTHO05D000235 1.5e-11 73.6 65 58.5
Sed0023886 Sechium edule HOM05D000364 ORTHO05D000235 1.5e-11 73.6 67 58.2
TWI38G1405 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 1.9e-11 73.2 56 67.9
CAN.G653.9 Capsicum annuum HOM05D000364 ORTHO05D000235 2.5e-11 72.8 57 66.7
Cpa.g.sc9.363 Carica papaya HOM05D000364 ORTHO05D000235 2.5e-11 72.8 56 64.3
Duzib212G0191 Durio zibethinus HOM05D000364 ORTHO05D000235 3.2e-11 72.4 56 66.1
PGR042G2400 Punica granatum HOM05D000364 ORTHO05D000235 3.2e-11 72.4 56 66.1
MSTRG.22031 Avicennia marina HOM05D000364 ORTHO05D000235 4.2e-11 72.0 56 62.5
Cfa015267 Carpinus fangiana HOM05D000364 ORTHO05D000235 4.2e-11 72.0 64 62.5
Sabra19G0108000 Salix brachista HOM05D000364 ORTHO05D000235 4.2e-11 72.0 56 64.3
MSTRG.4300 Avicennia marina HOM05D000364 ORTHO05D000235 5.5e-11 71.6 56 64.3
Gorai.011G135700 Gossypium raimondii HOM05D000364 ORTHO05D000235 5.5e-11 71.6 64 57.8
Medtr4g087300 Medicago truncatula HOM05D000364 ORTHO05D000235 5.5e-11 71.6 64 57.8
ClCG07G015210 Citrullus lanatus HOM05D000364 ORTHO05D000235 7.2e-11 71.2 67 56.7
SalBow6G6716 Salvia bowleyana HOM05D000364 ORTHO05D000235 7.2e-11 71.2 56 62.5
Gohir.A10G143800 Gossypium hirsutum HOM05D000364 ORTHO05D000235 9.4e-11 70.9 64 57.8
THA.LOC104800924 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 9.4e-11 70.9 64 54.7
Peaxi162Scf00075g01418 Petunia axillaris HOM05D000364 ORTHO05D000235 1.2e-10 70.5 57 64.9
Thecc.04G165700 Theobroma cacao HOM05D000364 ORTHO05D000235 1.6e-10 70.1 55 65.5
Ca_18639_v3 Cicer arietinum L. HOM05D000364 ORTHO05D000235 2.1e-10 69.7 65 55.4
Gohir.D10G123200 Gossypium hirsutum HOM05D000364 ORTHO05D000235 2.1e-10 69.7 64 56.2
Nitab4.5_0000122g0010 Nicotiana tabacum HOM05D000364 ORTHO05D000235 2.1e-10 69.7 57 63.2
Nitab4.5_0001433g0070 Nicotiana tabacum HOM05D000364 ORTHO05D000235 2.1e-10 69.7 57 63.2
Haze_01364 Corylus avellana HOM05D000364 ORTHO05D000235 2.7e-10 69.3 53 69.8
Psat7g120280 Pisum sativum HOM05D000364 ORTHO05D000235 2.7e-10 69.3 64 56.2
Lalb_Chr16g0384441 Lupinus albus HOM05D000364 ORTHO05D000235 3.6e-10 68.9 63 58.7
Oeu015726.1 Olea europaea HOM05D000364 ORTHO05D000235 3.6e-10 68.9 56 62.5
Sopen08g005050 Solanum pennellii HOM05D000364 ORTHO05D000235 3.6e-10 68.9 57 63.2
PGSC0003DMG400014621 Solanum tuberosum HOM05D000364 ORTHO05D000235 3.6e-10 68.9 57 63.2
Sed0020683 Sechium edule HOM05D000364 ORTHO05D000235 4.7e-10 68.6 56 62.5
Solyc08g014120.3 Solanum lycopersicum HOM05D000364 ORTHO05D000235 4.7e-10 68.6 57 63.2
TPR.G23515 Trifolium pratense HOM05D000364 ORTHO05D000235 4.7e-10 68.6 64 57.8
TAR362G0990 Trochodendron aralioides HOM05D000364 ORTHO05D000235 4.7e-10 68.6 56 62.5
Eucgr.L00002 Eucalyptus grandis HOM05D000364 ORTHO05D000235 6.1e-10 68.2 56 62.5
THA.LOC104815873 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 6.1e-10 68.2 64 53.1
CiPaw.02G100500 Carya illinoinensis HOM05D000364 ORTHO05D000235 1.0e-09 67.4 64 60.9
SGA_v2.0_scaffold12G06185 Striga asiatica HOM05D000364 ORTHO05D000235 1.8e-09 66.6 84 46.4
SGA_v2.0_scaffold283G46964 Striga asiatica HOM05D000364 ORTHO05D000235 1.8e-09 66.6 84 46.4
CANSAT56G1018 Cannabis sativa HOM05D000364 ORTHO05D000235 2.3e-09 66.2 66 57.6
Lalb_Chr09g0328111 Lupinus albus HOM05D000364 ORTHO05D000235 2.3e-09 66.2 56 64.3
Cfa011679 Carpinus fangiana HOM05D000364 ORTHO05D000235 8.8e-09 64.3 54 64.8
Gohir.D02G010100 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.2e-08 63.9 64 53.1
Gorai.005G012400 Gossypium raimondii HOM05D000364 ORTHO05D000235 1.2e-08 63.9 64 53.1
Oeu050337.1 Olea europaea HOM05D000364 ORTHO05D000235 1.2e-08 63.9 56 58.9
Rhsim09G0010400 Rhododendron simsii HOM05D000364 ORTHO05D000235 1.2e-08 63.9 81 44.4
Aa31LG5G5260 Aethionema arabicum HOM05D000364 ORTHO05D000235 1.5e-08 63.5 114 39.5
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 9.7e-08 60.8 56 58.9
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 9.7e-08 60.8 56 58.9
BolC3t14472H Brassica oleracea HOM05D000364 ORTHO05D000235 9.7e-08 60.8 56 58.9
CARHR005230 Cardamine hirsuta HOM05D000364 ORTHO05D000235 9.7e-08 60.8 56 57.1
CARHR125420 Cardamine hirsuta HOM05D000364 ORTHO05D000235 9.7e-08 60.8 56 57.1
Sp4g14190 Schrenkiella parvula HOM05D000364 ORTHO05D000235 9.7e-08 60.8 56 60.7
BcaB02g10414 Brassica carinata HOM05D000364 ORTHO05D000235 1.3e-07 60.5 56 57.1
BcaC02g11283 Brassica carinata HOM05D000364 ORTHO05D000235 1.3e-07 60.5 56 57.1
BolC4t23352H Brassica oleracea HOM05D000364 ORTHO05D000235 1.3e-07 60.5 56 57.1
AUR62002393 Chenopodium quinoa HOM05D000364 ORTHO05D000235 1.3e-07 60.5 119 37.0
AL1G15620 Arabidopsis lyrata HOM05D000364 ORTHO05D000235 1.7e-07 60.1 56 55.4
AT1G05710 Arabidopsis thaliana HOM05D000364 ORTHO05D000235 1.7e-07 60.1 56 57.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-07 60.1 56 57.1
BraA05t20314Z Brassica rapa HOM05D000364 ORTHO05D000235 1.7e-07 60.1 56 57.1
Thhalv10009016m.g Eutrema salsugineum HOM05D000364 ORTHO05D000235 1.7e-07 60.1 56 55.4
Carub.0004s1304 Capsella rubella HOM05D000364 ORTHO05D000235 2.2e-07 59.7 56 57.1
SalBow3G3762 Salvia bowleyana HOM05D000364 ORTHO05D000235 2.2e-07 59.7 56 55.4
Gohir.A02G009900 Gossypium hirsutum HOM05D000364 ORTHO05D000235 2.8e-07 59.3 84 42.9
BcaB03g13493 Brassica carinata HOM05D000364 ORTHO05D000235 3.7e-07 58.9 60 53.3
Carub.0001s0506 Capsella rubella HOM05D000364 ORTHO05D000235 3.7e-07 58.9 56 55.4
AUR62023796 Chenopodium quinoa HOM05D000364 ORTHO05D000235 3.7e-07 58.9 56 57.1
MBI08_g33173_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 3.7e-07 58.9 65 47.7
Sp1g04530 Schrenkiella parvula HOM05D000364 ORTHO05D000235 4.8e-07 58.5 56 53.6
Ah.13g073560 Amaranthus hybridus HOM05D000364 ORTHO05D000235 6.3e-07 58.2 56 57.1
EL10Ac3g06085 Beta vulgaris HOM05D000364 ORTHO05D000235 8.2e-07 57.8 56 55.4
BcaC07g36845 Brassica carinata HOM05D000364 ORTHO05D000235 1.4e-06 57.0 64 48.4
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.4e-06 57.0 56 57.1
C08p02200 Brassica napus HOM05D000364 ORTHO05D000235 1.4e-06 57.0 64 48.4
BolC8t47012H Brassica oleracea HOM05D000364 ORTHO05D000235 1.4e-06 57.0 64 48.4
PSO732G0049 Papaver somniferum HOM05D000364 ORTHO05D000235 1.4e-06 57.0 58 58.6
BcaB02g06828 Brassica carinata HOM05D000364 ORTHO05D000235 2.4e-06 56.2 57 54.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 3.1e-06 55.8 56 55.4
PSO675G4730 Papaver somniferum HOM05D000364 ORTHO05D000235 3.1e-06 55.8 58 56.9
Aa31LG1G8640 Aethionema arabicum HOM05D000364 ORTHO05D000235 4.1e-06 55.5 65 50.8
AL4G26990 Arabidopsis lyrata HOM05D000364 ORTHO05D000235 4.1e-06 55.5 57 57.9
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 4.1e-06 55.5 56 57.1
AT2G31730 Arabidopsis thaliana HOM05D000364 ORTHO05D000235 5.3e-06 55.1 57 57.9
Hund03201 Selenicereus undatus HOM05D000364 ORTHO05D000235 9.1e-06 54.3 56 51.8


User provided reference genes

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