Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002393 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 1.1e-103 379.8 176 100.0
CSS0020985 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 2.1e-89 332.4 186 86.6
CSS0009716 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 1.8e-88 329.3 186 86.6
CSS0000252 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 5.2e-88 327.8 186 84.9
CSS0007676 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 2.0e-84 315.8 186 80.6
CSS0019119 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 2.0e-84 315.8 186 80.6
Rhsim01G0034300 Rhododendron simsii HOM05D003419 ORTHO05D004113 3.5e-84 315.1 186 80.6
CAN.G1424.14 Capsicum annuum HOM05D003419 ORTHO05D004113 6.5e-83 310.8 184 79.9
Peaxi162Scf00252g00012 Petunia axillaris HOM05D003419 ORTHO05D004113 1.5e-82 309.7 184 78.8
PGSC0003DMG400011180 Solanum tuberosum HOM05D003419 ORTHO05D004113 7.2e-82 307.4 184 78.8
Solyc07g005520.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 2.1e-81 305.8 184 78.3
Sopen00g009550 Solanum pennellii HOM05D003419 ORTHO05D004113 2.1e-81 305.8 184 78.3
Sopen07g001620 Solanum pennellii HOM05D003419 ORTHO05D004113 2.1e-81 305.8 184 78.3
Cfa020831 Carpinus fangiana HOM05D003419 ORTHO05D004113 2.7e-81 305.4 185 77.8
Haze_19215 Corylus avellana HOM05D003419 ORTHO05D004113 2.7e-81 305.4 185 77.8
Cc06_g15090 Coffea canephora HOM05D003419 ORTHO05D004113 6.1e-81 304.3 184 77.2
CSS0032002 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 1.0e-80 303.5 186 81.2
CiPaw.16G113500 Carya illinoinensis HOM05D003419 ORTHO05D004113 1.4e-80 303.1 185 75.1
Hma1.2p1_0222F.1_g093430 Hydrangea macrophylla HOM05D003419 ORTHO05D004113 1.8e-80 302.8 185 77.8
CiPaw.15G176700 Carya illinoinensis HOM05D003419 ORTHO05D004113 5.2e-80 301.2 185 76.2
Oeu021283.1 Olea europaea HOM05D003419 ORTHO05D004113 5.2e-80 301.2 184 77.2
RcHm_v2.0_Chr2g0085761 Rosa chinensis HOM05D003419 ORTHO05D004113 1.5e-79 299.7 185 75.7
THA.LOC104819905 Tarenaya hassleriana HOM05D003419 ORTHO05D004113 2.6e-79 298.9 183 76.0
MD15G1152600 Malus domestica HOM05D003419 ORTHO05D004113 3.3e-79 298.5 185 75.1
Prupe.7G262000 Prunus persica HOM05D003419 ORTHO05D004113 4.4e-79 298.1 185 76.2
BolC8t51513H Brassica oleracea HOM05D003419 ORTHO05D004113 7.5e-79 297.4 183 75.4
Sed0021068 Sechium edule HOM05D003419 ORTHO05D004113 7.5e-79 297.4 186 76.3
AL4G14490 Arabidopsis lyrata HOM05D003419 ORTHO05D004113 9.7e-79 297.0 183 75.4
AT2G24240 Arabidopsis thaliana HOM05D003419 ORTHO05D004113 9.7e-79 297.0 183 75.4
A09p56400 Brassica napus HOM05D003419 ORTHO05D004113 9.7e-79 297.0 183 74.9
BraA09t41034Z Brassica rapa HOM05D003419 ORTHO05D004113 9.7e-79 297.0 183 74.9
Atru.chr7.109 Acer truncatum HOM05D003419 ORTHO05D004113 1.3e-78 296.6 183 75.4
Carub.0004s0351 Capsella rubella HOM05D003419 ORTHO05D004113 1.3e-78 296.6 183 75.4
CARHR117900 Cardamine hirsuta HOM05D003419 ORTHO05D004113 1.3e-78 296.6 183 75.4
Thhalv10000165m.g Eutrema salsugineum HOM05D003419 ORTHO05D004113 1.3e-78 296.6 183 75.4
C08p39390 Brassica napus HOM05D003419 ORTHO05D004113 1.7e-78 296.2 183 75.4
CsaV3_1G028940 Cucumis sativus L. HOM05D003419 ORTHO05D004113 2.8e-78 295.4 186 76.3
TAR626G1811 Trochodendron aralioides HOM05D003419 ORTHO05D004113 2.8e-78 295.4 183 77.0
ClCG06G012360 Citrullus lanatus HOM05D003419 ORTHO05D004113 3.7e-78 295.0 186 75.8
MELO3C010221.2 Cucumis melo HOM05D003419 ORTHO05D004113 3.7e-78 295.0 186 75.3
Migut.K00332 Erythranthe guttata HOM05D003419 ORTHO05D004113 4.8e-78 294.7 179 77.7
FvH4_1g01020 Fragaria vesca HOM05D003419 ORTHO05D004113 4.8e-78 294.7 185 74.1
FAN28G1467 Fragaria x ananassa HOM05D003419 ORTHO05D004113 4.8e-78 294.7 185 74.1
Ciclev10028452m.g Citrus clementina HOM05D003419 ORTHO05D004113 6.3e-78 294.3 183 76.0
Cpa.g.sc46.147 Carica papaya HOM05D003419 ORTHO05D004113 8.2e-78 293.9 183 75.4
FAN23G2671 Fragaria x ananassa HOM05D003419 ORTHO05D004113 8.2e-78 293.9 185 73.5
Nn2g12346 Nelumbo nucifera HOM05D003419 ORTHO05D004113 8.2e-78 293.9 185 75.1
Thecc.09G031700 Theobroma cacao HOM05D003419 ORTHO05D004113 1.1e-77 293.5 183 75.4
Sp4g03210 Schrenkiella parvula HOM05D003419 ORTHO05D004113 1.4e-77 293.1 183 74.9
Sed0021429 Sechium edule HOM05D003419 ORTHO05D004113 1.4e-77 293.1 186 74.2
MSTRG.19643 Avicennia marina HOM05D003419 ORTHO05D004113 1.8e-77 292.7 184 76.6
SGA_v2.0_scaffold206G41807 Striga asiatica HOM05D003419 ORTHO05D004113 1.8e-77 292.7 184 74.5
COL.COLO4_18798 Corchorus olitorius HOM05D003419 ORTHO05D004113 2.4e-77 292.4 184 74.5
Duzib150G1366 Durio zibethinus HOM05D003419 ORTHO05D004113 2.4e-77 292.4 183 74.9
GSVIVG01003872001 Vitis vinifera HOM05D003419 ORTHO05D004113 3.1e-77 292.0 185 75.1
FAN26G1223 Fragaria x ananassa HOM05D003419 ORTHO05D004113 4.1e-77 291.6 185 73.5
Lj9P716T33 Lonicera japonica HOM05D003419 ORTHO05D004113 4.1e-77 291.6 189 73.0
Gohir.A06G097100 Gossypium hirsutum HOM05D003419 ORTHO05D004113 5.3e-77 291.2 183 74.9
CSS0034402 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 9.1e-77 290.4 168 84.5
Gohir.A05G052300 Gossypium hirsutum HOM05D003419 ORTHO05D004113 1.2e-76 290.0 183 73.8
CARHR238840 Cardamine hirsuta HOM05D003419 ORTHO05D004113 1.6e-76 289.7 180 75.0
MBI14_g24795_MAGBIO Magnolia biondii HOM05D003419 ORTHO05D004113 1.6e-76 289.7 183 73.2
Gorai.009G055600 Gossypium raimondii HOM05D003419 ORTHO05D004113 2.0e-76 289.3 182 74.2
Lsat_1_v5_gn_8_64041 Lactuca sativa HOM05D003419 ORTHO05D004113 2.0e-76 289.3 187 73.8
Manes.06G036400 Manihot esculenta HOM05D003419 ORTHO05D004113 2.0e-76 289.3 183 74.3
MSTRG.26281 Avicennia marina HOM05D003419 ORTHO05D004113 2.7e-76 288.9 182 74.7
Gohir.D05G053800 Gossypium hirsutum HOM05D003419 ORTHO05D004113 2.7e-76 288.9 183 73.8
DCAR_019388 Daucus carota HOM05D003419 ORTHO05D004113 4.5e-76 288.1 189 72.5
Potri.006G185300 Populus trichocarpa HOM05D003419 ORTHO05D004113 4.5e-76 288.1 185 73.5
CANSAT11G2069 Cannabis sativa HOM05D003419 ORTHO05D004113 5.9e-76 287.7 186 73.1
Carub.0007s0960 Capsella rubella HOM05D003419 ORTHO05D004113 5.9e-76 287.7 185 73.0
PGR142G3121 Punica granatum HOM05D003419 ORTHO05D004113 5.9e-76 287.7 184 73.9
HanXRQChr05g0145591 Helianthus annuus HOM05D003419 ORTHO05D004113 1.0e-75 287.0 181 74.6
Duzib168G1116 Durio zibethinus HOM05D003419 ORTHO05D004113 1.3e-75 286.6 179 75.4
Lj4g0013267 Lotus japonicus HOM05D003419 ORTHO05D004113 1.3e-75 286.6 186 72.6
Phvul.003G156500 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 1.7e-75 286.2 188 71.8
PSO339G6115 Papaver somniferum HOM05D003419 ORTHO05D004113 2.2e-75 285.8 184 73.4
PSO384G4412 Papaver somniferum HOM05D003419 ORTHO05D004113 2.2e-75 285.8 184 73.4
Potri.018G107600 Populus trichocarpa HOM05D003419 ORTHO05D004113 2.2e-75 285.8 185 73.0
Ca_21121_v3 Cicer arietinum L. HOM05D003419 ORTHO05D004113 2.9e-75 285.4 186 72.0
Aa31LG7G12560 Aethionema arabicum HOM05D003419 ORTHO05D004113 3.8e-75 285.0 182 74.2
Glyma.02G203400 Glycine max HOM05D003419 ORTHO05D004113 3.8e-75 285.0 186 72.0
Glyma.17G074300 Glycine max HOM05D003419 ORTHO05D004113 3.8e-75 285.0 186 72.0
Sabra18G0091600 Salix brachista HOM05D003419 ORTHO05D004113 5.0e-75 284.6 185 72.4
Gohir.D06G097700 Gossypium hirsutum HOM05D003419 ORTHO05D004113 8.5e-75 283.9 183 73.8
Gorai.010G112700 Gossypium raimondii HOM05D003419 ORTHO05D004113 8.5e-75 283.9 183 73.8
Lalb_Chr07g0179841 Lupinus albus HOM05D003419 ORTHO05D004113 1.5e-74 283.1 188 71.8
Aqoxy7G03426 Aquilegia oxysepala HOM05D003419 ORTHO05D004113 1.9e-74 282.7 183 74.9
Medtr4g130970 Medicago truncatula HOM05D003419 ORTHO05D004113 2.5e-74 282.3 186 71.5
Phvul.005G040750 Phaseolus vulgaris HOM05D003419 ORTHO05D004113 2.5e-74 282.3 186 71.0
TPR.G39243 Trifolium pratense HOM05D003419 ORTHO05D004113 5.5e-74 281.2 186 71.0
Duzib187G1066 Durio zibethinus HOM05D003419 ORTHO05D004113 7.2e-74 280.8 183 72.7
Lalb_Chr13g0300891 Lupinus albus HOM05D003419 ORTHO05D004113 7.2e-74 280.8 188 71.3
AL7G21140 Arabidopsis lyrata HOM05D003419 ORTHO05D004113 9.4e-74 280.4 185 72.4
QL02p093099 Quercus lobata HOM05D003419 ORTHO05D004113 9.4e-74 280.4 189 72.0
TWI34G1449 Tripterygium wilfordii HOM05D003419 ORTHO05D004113 2.7e-73 278.9 187 71.1
Psat4g009480 Pisum sativum HOM05D003419 ORTHO05D004113 3.6e-73 278.5 186 71.0
VMungo1080G0101 Vigna mungo HOM05D003419 ORTHO05D004113 3.6e-73 278.5 186 71.0
VMungo1215G0436 Vigna mungo HOM05D003419 ORTHO05D004113 3.6e-73 278.5 188 70.2
AT4G30940 Arabidopsis thaliana HOM05D003419 ORTHO05D004113 6.1e-73 277.7 185 71.4
BcaC07g40947 Brassica carinata HOM05D003419 ORTHO05D004113 6.1e-73 277.7 173 74.0
Sabra06G0140800 Salix brachista HOM05D003419 ORTHO05D004113 1.8e-72 276.2 185 70.8
Eucgr.C00354 Eucalyptus grandis HOM05D003419 ORTHO05D004113 1.5e-71 273.1 179 73.7
TWI32G0397 Tripterygium wilfordii HOM05D003419 ORTHO05D004113 2.6e-71 272.3 187 69.0
Aa31LG2G19400 Aethionema arabicum HOM05D003419 ORTHO05D004113 3.7e-70 268.5 185 69.7
Nitab4.5_0007899g0020 Nicotiana tabacum HOM05D003419 ORTHO05D004113 4.1e-69 265.0 162 78.4
AUR62037723 Chenopodium quinoa HOM05D003419 ORTHO05D004113 2.0e-68 262.7 198 64.1
ATR0739G121 Amborella trichopoda HOM05D003419 ORTHO05D004113 3.5e-68 261.9 179 68.2
EL10Ac2g02408 Beta vulgaris HOM05D003419 ORTHO05D004113 4.5e-68 261.5 196 64.8
Ah.12g061300 Amaranthus hybridus HOM05D003419 ORTHO05D004113 5.9e-68 261.2 193 64.8
AUR62020282 Chenopodium quinoa HOM05D003419 ORTHO05D004113 7.7e-68 260.8 198 63.6
HPP92_017481 Vanilla planifolia HOM05D003419 ORTHO05D004113 4.2e-66 255.0 189 64.0
Dinv41385 Davidia involucrata HOM05D003419 ORTHO05D004113 5.5e-66 254.6 171 70.8
SHI02824 Sapria himalayana HOM05D003419 ORTHO05D004113 6.1e-65 251.1 174 67.2
Os04g0501500 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D004113 1.5e-63 246.5 186 62.9
Zm00001eb425960 Zea mays HOM05D003419 ORTHO05D004113 9.8e-63 243.8 186 62.9
Dinv42862 Davidia involucrata HOM05D003419 ORTHO05D004113 5.9e-60 234.6 178 65.2
Dinv43238 Davidia involucrata HOM05D003419 ORTHO05D004113 5.9e-60 234.6 178 65.2
Actinidia38330 Actinidia chinensis HOM05D003419 ORTHO05D004113 2.5e-58 229.2 145 74.5
Os02g0612700 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D004113 2.6e-55 219.2 193 56.0
CSS0045352 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 8.9e-48 194.1 183 58.5
CSS0029781 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 1.2e-47 193.7 178 57.3
Pp3c1_10060 Physcomitrium patens HOM05D003419 ORTHO05D004113 1.7e-46 189.9 184 51.1
Nitab4.5_0005188g0050 Nicotiana tabacum HOM05D003419 ORTHO05D004113 2.2e-46 189.5 160 61.2
CSS0039946 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 4.9e-46 188.3 183 55.2
PSO017G5120 Papaver somniferum HOM05D003419 ORTHO05D004113 3.2e-45 185.7 179 52.5
CSS0030551 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 9.2e-45 184.1 178 55.1
PGSC0003DMG400035291 Solanum tuberosum HOM05D003419 ORTHO05D004113 2.0e-44 183.0 181 50.3
VMungo1127G0049 Vigna mungo HOM05D003419 ORTHO05D004113 1.0e-43 180.6 139 65.5
Pp3c2_37860 Physcomitrium patens HOM05D003419 ORTHO05D004113 1.3e-43 180.3 184 49.5
Sopen12g004980 Solanum pennellii HOM05D003419 ORTHO05D004113 1.3e-43 180.3 179 50.8
Rhsim01G0034600 Rhododendron simsii HOM05D003419 ORTHO05D004113 2.5e-42 176.0 192 51.6
Peaxi162Scf01694g00005 Petunia axillaris HOM05D003419 ORTHO05D004113 7.3e-42 174.5 185 48.6
PGSC0003DMG400047036 Solanum tuberosum HOM05D003419 ORTHO05D004113 2.1e-41 172.9 172 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2401 Anthoceros agrestis HOM05D003419 ORTHO05D004113 3.6e-41 172.2 187 48.7
PGSC0003DMG400039027 Solanum tuberosum HOM05D003419 ORTHO05D004113 4.7e-41 171.8 172 50.6
SalBow1G6750 Salvia bowleyana HOM05D003419 ORTHO05D004113 1.4e-40 170.2 174 51.1
CSS0001615 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 5.2e-40 168.3 111 72.1
Solyc12g010100.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 6.8e-40 167.9 179 48.6
PSO013G0308 Papaver somniferum HOM05D003419 ORTHO05D004113 2.0e-39 166.4 181 51.4
Sopen12g004960 Solanum pennellii HOM05D003419 ORTHO05D004113 2.0e-39 166.4 172 49.4
PSO013G0156 Papaver somniferum HOM05D003419 ORTHO05D004113 1.7e-38 163.3 181 49.7
PSO339G6337 Papaver somniferum HOM05D003419 ORTHO05D004113 2.9e-38 162.5 184 51.1
PSO339G2946 Papaver somniferum HOM05D003419 ORTHO05D004113 4.9e-38 161.8 184 50.5
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 4.9e-38 161.8 175 47.4
SEGI_14882 Sequoiadendron giganteum HOM05D003419 ORTHO05D004113 6.4e-38 161.4 190 43.2
PSO013G0392 Papaver somniferum HOM05D003419 ORTHO05D004113 8.3e-38 161.0 183 50.3
Sopen12g004970 Solanum pennellii HOM05D003419 ORTHO05D004113 8.3e-38 161.0 168 48.2
PSO421G0007 Papaver somniferum HOM05D003419 ORTHO05D004113 2.4e-37 159.5 181 47.5
PSO421G0094 Papaver somniferum HOM05D003419 ORTHO05D004113 3.9e-35 152.1 200 45.5
PSO478G4690 Papaver somniferum HOM05D003419 ORTHO05D004113 3.9e-35 152.1 174 48.3
Rhsim01G0034500 Rhododendron simsii HOM05D003419 ORTHO05D004113 3.9e-35 152.1 166 52.4
TAR383G0137 Trochodendron aralioides HOM05D003419 ORTHO05D004113 3.9e-35 152.1 92 77.2
PSO478G0430 Papaver somniferum HOM05D003419 ORTHO05D004113 8.6e-35 151.0 174 47.7
PSO478G3081 Papaver somniferum HOM05D003419 ORTHO05D004113 8.6e-35 151.0 174 47.7
Peaxi162Scf00496g10012 Petunia axillaris HOM05D003419 ORTHO05D004113 5.6e-34 148.3 144 52.8
CDE01G0752 Ceratophyllum demersum HOM05D003419 ORTHO05D004113 1.2e-33 147.1 173 48.6
Peaxi162Scf00165g00172 Petunia axillaris HOM05D003419 ORTHO05D004113 4.7e-33 145.2 181 45.9
Rhsim01G0034800 Rhododendron simsii HOM05D003419 ORTHO05D004113 6.2e-33 144.8 165 50.3
Nitab4.5_0008286g0010 Nicotiana tabacum HOM05D003419 ORTHO05D004113 1.1e-32 144.1 134 51.5
CAN.G551.40 Capsicum annuum HOM05D003419 ORTHO05D004113 2.0e-31 139.8 182 40.1
Rhsim01G0034900 Rhododendron simsii HOM05D003419 ORTHO05D004113 2.9e-30 136.0 126 54.8
Solyc12g010080.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 1.1e-29 134.0 119 52.9
PGSC0003DMG400042068 Solanum tuberosum HOM05D003419 ORTHO05D004113 4.1e-29 132.1 175 43.4
Nitab4.5_0002315g0200 Nicotiana tabacum HOM05D003419 ORTHO05D004113 2.4e-24 116.3 146 40.4
Zm00001eb172250 Zea mays HOM05D003419 ORTHO05D004113 3.1e-24 115.9 110 56.4
SMO115G0211 Selaginella moellendorffii HOM05D003419 ORTHO05D004113 4.0e-24 115.5 191 32.5
PSO384G1588 Papaver somniferum HOM05D003419 ORTHO05D004113 2.6e-23 112.8 74 67.6
Nitab4.5_0001478g0020 Nicotiana tabacum HOM05D003419 ORTHO05D004113 6.4e-22 108.2 90 58.9
ClCG08G009430 Citrullus lanatus HOM05D003419 ORTHO05D004113 3.5e-20 102.4 199 36.2
Solyc12g010090.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 7.8e-20 101.3 73 57.5
PGR083G1901 Punica granatum HOM05D003419 ORTHO05D004113 3.0e-19 99.4 178 32.6
PGR083G1748 Punica granatum HOM05D003419 ORTHO05D004113 4.3e-18 95.5 170 31.2
PGSC0003DMG400040536 Solanum tuberosum HOM05D003419 ORTHO05D004113 6.2e-17 91.7 93 50.5
Dinv39276 Davidia involucrata HOM05D003419 ORTHO05D184888 4.5e-15 85.5 76 55.3
Os06g0159750 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D037093 7.9e-12 74.7 72 50.0
PSO421G0005 Papaver somniferum HOM05D003419 ORTHO05D004113 3.0e-11 72.8 69 52.2
HPP92_017487 Vanilla planifolia HOM05D003419 ORTHO05D037093 3.9e-11 72.4 53 58.5
PSO421G0374 Papaver somniferum HOM05D003419 ORTHO05D004113 1.9e-10 70.1 102 40.2
CSS0033263 Camellia sinensis var. sinensis HOM05D003419 ORTHO05D004113 1.4e-08 63.9 49 61.2
Os02g0213700 Oryza sativa ssp. japonica HOM05D003419 ORTHO05D037093 3.1e-08 62.8 58 51.7
PSO421G0327 Papaver somniferum HOM05D003419 ORTHO05D004113 5.3e-08 62.0 90 42.2


User provided reference genes

Program Settings