Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.4e-302 1040.4 500 100.0
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-300 1035.0 500 99.4
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-300 1035.0 500 99.4
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.1e-300 1033.9 500 99.4
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.1e-299 1031.6 500 99.0
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-299 1029.6 500 98.8
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-297 1025.8 500 98.6
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.6e-296 1021.9 500 98.2
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.6e-296 1020.8 500 97.6
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-294 1015.4 500 97.4
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.9e-294 1012.7 500 97.2
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-293 1012.3 500 97.2
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.1e-292 1007.3 500 97.0
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 8.6e-213 743.8 500 71.0
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.4e-210 736.5 509 69.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 8.3e-208 727.2 499 70.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 4.5e-206 721.5 502 68.9
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 8.0e-203 710.7 498 68.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 3.1e-202 708.8 499 69.1
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 6.4e-200 701.0 504 68.8
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.1e-199 700.3 474 70.0
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.9e-199 699.5 497 68.0
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.0e-198 696.0 479 69.3
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 9.5e-196 687.2 470 68.9
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 6.2e-195 684.5 501 66.5
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.3e-194 682.6 498 65.5
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 2.3e-194 682.6 499 66.5
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.2e-193 680.2 497 66.4
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 3.5e-190 668.7 497 65.6
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 7.3e-188 661.0 402 76.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 2.8e-187 659.1 500 65.0
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 2.3e-186 656.0 496 64.1
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 4.4e-185 651.7 507 63.9
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.7e-184 649.8 502 64.1
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.9e-184 649.0 502 63.5
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.4e-183 646.7 500 62.0
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.4e-183 646.0 400 75.2
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 4.1e-183 645.2 492 65.2
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 4.1e-183 645.2 400 74.8
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 5.4e-183 644.8 360 81.1
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.6e-182 643.3 400 74.0
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 4.6e-182 641.7 404 74.3
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 6.0e-182 641.3 489 64.6
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 7.8e-182 641.0 496 63.7
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.3e-181 640.2 404 76.2
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.3e-181 639.4 499 62.7
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 3.0e-181 639.0 496 63.3
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.0e-181 639.0 415 71.6
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 3.0e-181 639.0 499 63.5
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.9e-180 636.3 500 63.4
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 5.6e-180 634.8 494 63.4
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 7.3e-180 634.4 497 63.0
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 3.6e-179 632.1 398 74.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 4.0e-178 628.6 406 72.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.5e-177 626.7 507 61.3
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 2.0e-177 626.3 502 62.7
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 4.4e-177 625.2 500 60.6
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 9.9e-177 624.0 479 64.3
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 9.9e-177 624.0 405 70.4
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 1.3e-176 623.6 501 61.3
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.7e-176 623.2 498 61.8
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 5.4e-175 618.2 492 62.2
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 1.2e-174 617.1 487 62.8
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.2e-174 617.1 400 72.2
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.2e-174 617.1 378 73.8
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.6e-174 616.7 494 61.9
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.7e-173 613.2 493 59.2
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 2.3e-173 612.8 400 70.2
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 1.1e-172 610.5 487 62.2
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.5e-172 610.1 348 83.0
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 4.3e-172 608.6 400 71.0
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.1e-171 606.3 404 70.5
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 2.8e-171 605.9 400 70.5
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 6.2e-171 604.7 402 70.1
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 6.9e-170 601.3 396 72.0
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 9.0e-170 600.9 506 59.7
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.5e-169 600.1 393 72.0
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.3e-168 597.0 502 60.2
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 2.1e-166 589.7 403 68.0
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.7e-165 586.6 369 73.2
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.1e-164 583.9 499 57.7
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 3.5e-158 562.4 369 70.5
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.0e-157 560.8 440 61.1
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.0e-157 560.8 359 72.1
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 2.3e-157 559.7 478 58.6
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.9e-156 556.6 430 62.6
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.7e-155 552.4 391 66.0
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 3.4e-153 545.8 508 55.1
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 4.6e-150 535.4 455 57.6
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 2.3e-149 533.1 489 57.3
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.9e-149 532.3 350 69.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 1.5e-129 467.2 391 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 2.0e-129 466.8 386 58.8
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 2.0e-124 450.3 293 73.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 2.1e-118 430.3 477 50.5
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.0e-117 427.9 353 59.8
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.2e-108 397.9 407 49.4
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.9e-95 354.0 296 56.8
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.9e-91 340.1 209 75.1
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 8.0e-86 322.0 433 40.4
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.4e-82 310.5 443 39.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 2.3e-72 277.3 447 37.1
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 5.1e-64 249.6 302 44.7
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-62 245.0 400 37.5
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-61 241.1 162 69.8
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 3.2e-42 177.2 224 46.9
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.6e-41 173.3 322 31.1
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 1.5e-28 131.7 308 32.1
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.3e-27 128.6 89 69.7
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.9e-23 114.8 295 29.2
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 3.2e-18 97.4 70 65.7
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 6.7e-16 89.7 59 64.4
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 9.4e-10 69.3 89 40.4


User provided reference genes

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