Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.8e-168 595.9 308 100.0
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.7e-166 589.3 310 99.0
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 1.1e-114 417.2 312 72.8
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 2.5e-114 416.0 307 72.0
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 3.8e-110 402.1 311 69.5
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.1e-109 400.6 284 76.8
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 1.4e-104 383.6 312 69.6
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 2.0e-103 379.8 318 66.7
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 8.4e-102 374.4 306 61.4
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.3e-97 360.5 313 63.3
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 8.1e-97 357.8 303 65.7
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.6e-95 352.8 322 63.4
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 4.5e-95 352.1 306 59.5
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 1.3e-94 350.5 303 63.7
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.9e-94 349.4 306 59.2
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 4.9e-94 348.6 330 62.1
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.2e-93 345.5 315 63.8
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 9.3e-93 344.4 300 61.3
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.6e-92 342.0 318 62.9
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 6.0e-92 341.7 305 63.0
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 7.9e-92 341.3 298 60.7
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 7.9e-92 341.3 341 59.2
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.0e-91 340.9 319 60.5
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 1.0e-91 340.9 334 60.8
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 1.3e-91 340.5 352 58.5
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 3.9e-91 339.0 316 56.3
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 8.7e-91 337.8 241 69.7
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 1.5e-90 337.0 301 60.8
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.9e-90 336.7 234 72.6
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 3.3e-90 335.9 292 62.7
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 3.3e-90 335.9 362 57.5
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.8e-89 332.8 332 60.2
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 2.8e-89 332.8 324 60.5
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 6.2e-89 331.6 312 59.0
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 8.2e-89 331.3 314 60.8
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 1.8e-88 330.1 333 57.1
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.4e-88 329.7 339 59.0
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 1.2e-87 327.4 310 58.4
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.5e-87 327.0 318 60.4
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.0e-87 326.6 332 59.3
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 3.4e-87 325.9 240 68.8
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 4.5e-87 325.5 318 58.8
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 5.8e-87 325.1 321 58.6
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 7.6e-87 324.7 309 57.9
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.0e-86 324.3 273 61.2
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.0e-86 324.3 290 60.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.4e-85 320.5 304 58.6
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 3.2e-85 319.3 307 56.0
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 5.5e-85 318.5 294 59.2
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.2e-84 317.4 314 54.1
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.2e-84 317.4 307 56.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 1.6e-84 317.0 304 56.6
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 2.7e-84 316.2 309 53.7
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 3.5e-84 315.8 237 65.4
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 6.0e-84 315.1 307 57.3
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 6.0e-84 315.1 270 58.5
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 7.9e-84 314.7 309 57.0
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 7.9e-84 314.7 273 63.0
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.8e-83 313.5 314 57.6
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 3.0e-83 312.8 302 55.0
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 6.7e-83 311.6 309 57.6
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.1e-82 310.8 310 53.9
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.1e-82 310.8 274 58.0
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 1.5e-82 310.5 234 65.0
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.9e-82 310.1 242 64.5
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 2.5e-82 309.7 269 59.5
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 4.3e-82 308.9 307 55.4
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 4.3e-82 308.9 303 55.4
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.3e-82 308.9 278 59.7
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.3e-81 307.4 309 58.3
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 2.2e-81 306.6 315 54.6
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 2.2e-81 306.6 301 58.1
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 2.2e-81 306.6 271 65.3
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 2.2e-81 306.6 306 54.6
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 2.8e-81 306.2 231 64.5
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 3.7e-81 305.8 242 62.4
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 3.7e-81 305.8 242 62.4
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.4e-80 303.1 286 58.0
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 4.1e-80 302.4 236 65.7
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 9.0e-80 301.2 307 56.4
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 9.0e-80 301.2 309 54.4
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 2.0e-79 300.1 309 52.4
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 2.0e-79 300.1 223 64.1
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 3.4e-79 299.3 309 52.4
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 5.9e-79 298.5 312 56.1
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 7.7e-79 298.1 316 53.8
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 7.7e-79 298.1 242 62.0
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 3.8e-78 295.8 244 63.1
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 7.2e-77 291.6 323 54.2
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 2.1e-76 290.0 262 59.9
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.0e-75 287.7 240 58.8
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 1.0e-75 287.7 240 58.8
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 5.1e-75 285.4 298 56.0
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 1.1e-74 284.3 245 60.0
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.1e-72 277.7 317 50.8
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 5.3e-72 275.4 193 68.9
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 9.1e-72 274.6 367 45.8
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.7e-68 263.1 260 54.2
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 1.0e-67 261.2 365 44.9
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 1.5e-66 257.3 288 53.5
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 4.1e-64 249.2 196 64.8
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 5.5e-61 238.8 217 60.4
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.0e-59 234.6 286 49.7
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 3.0e-59 233.0 166 69.3
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 2.6e-58 229.9 218 56.0
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 1.3e-57 227.6 178 63.5
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 3.1e-56 223.0 140 76.4
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 2.0e-55 220.3 140 79.3
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.6e-50 203.4 221 49.3
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 4.1e-48 196.1 227 49.3
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 7.7e-47 191.8 247 46.6
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 3.8e-46 189.5 229 48.0
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.2e-43 179.1 200 51.5
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.0e-42 177.2 225 44.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.7e-38 164.1 248 42.7
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 1.5e-37 161.0 220 43.2
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.2e-34 151.4 216 42.1
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.2e-34 151.4 216 42.1
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 9.2e-32 141.7 90 80.0
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 3.5e-31 139.8 195 42.1
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-25 120.6 78 75.6
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.6e-23 114.4 224 35.3
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.9e-21 107.5 180 40.6
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 8.6e-14 82.0 74 60.8
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 6.0e-07 59.3 119 29.4


User provided reference genes

Program Settings