Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002379 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.4e-47 192.6 93 100.0
CSS0034072 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 6.6e-26 120.6 55 98.2
CSS0013113 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 4.3e-25 117.9 55 94.5
CSS0002439 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 3.6e-24 114.8 52 98.1
CSS0025411 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 4.0e-23 111.3 66 80.3
CSS0022653 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 4.1e-20 101.3 53 88.7
GSVIVG01025280001 Vitis vinifera HOM05D000561 ORTHO05D000514 7.1e-20 100.5 55 81.8
Rhsim13G0222000 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.7e-19 98.6 55 76.4
TAR636G2461 Trochodendron aralioides HOM05D000561 ORTHO05D000514 4.6e-19 97.8 52 82.7
Nn2g15468 Nelumbo nucifera HOM05D000561 ORTHO05D000514 6.0e-19 97.4 52 80.8
MBI01_g18892_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D000514 2.3e-18 95.5 55 76.4
ATR0605G067 Amborella trichopoda HOM05D000561 ORTHO05D000514 3.9e-18 94.7 52 78.8
HanXRQChr13g0405951 Helianthus annuus HOM05D000561 ORTHO05D000514 3.9e-18 94.7 51 82.4
Glyma.13G340200 Glycine max HOM05D000561 ORTHO05D000514 6.6e-18 94.0 55 76.4
TWI34G1960 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 1.1e-17 93.2 71 63.4
Aqoxy1G00237 Aquilegia oxysepala HOM05D000561 ORTHO05D000514 1.5e-17 92.8 55 70.9
Thecc.09G232000 Theobroma cacao HOM05D000561 ORTHO05D000514 1.5e-17 92.8 55 78.2
ECA248G2811 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.3e-17 91.7 55 72.7
Hund07519 Selenicereus undatus HOM05D000561 ORTHO05D000514 4.3e-17 91.3 60 71.7
Duzib168G0910 Durio zibethinus HOM05D000561 ORTHO05D000514 5.6e-17 90.9 55 76.4
Gohir.A08G013600 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.6e-17 90.9 55 74.5
Gohir.D08G024100 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.6e-17 90.9 55 74.5
Gorai.004G019500 Gossypium raimondii HOM05D000561 ORTHO05D000514 5.6e-17 90.9 55 74.5
Hma1.2p1_0606F.1_g188060 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 7.3e-17 90.5 55 74.5
MD11G1197600 Malus domestica HOM05D000561 ORTHO05D000514 7.3e-17 90.5 57 70.2
Solyc11g065880.2 Solanum lycopersicum HOM05D000561 ORTHO05D000514 7.3e-17 90.5 60 70.0
Sopen11g025610 Solanum pennellii HOM05D000561 ORTHO05D000514 7.3e-17 90.5 60 70.0
COL.COLO4_24888 Corchorus olitorius HOM05D000561 ORTHO05D000514 9.6e-17 90.1 55 74.5
Glyma.12G057300 Glycine max HOM05D000561 ORTHO05D000514 9.6e-17 90.1 54 74.1
Gohir.A07G124500 Gossypium hirsutum HOM05D000561 ORTHO05D000514 9.6e-17 90.1 55 74.5
Gohir.D07G128800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 9.6e-17 90.1 55 74.5
Gorai.001G139100 Gossypium raimondii HOM05D000561 ORTHO05D000514 9.6e-17 90.1 55 74.5
Glyma.15G034200 Glycine max HOM05D000561 ORTHO05D000514 1.2e-16 89.7 55 72.7
Cpa.g.sc84.66 Carica papaya HOM05D000561 ORTHO05D000514 1.6e-16 89.4 55 72.7
PGSC0003DMG400007361 Solanum tuberosum HOM05D000561 ORTHO05D000514 1.6e-16 89.4 60 68.3
QL01p004975 Quercus lobata HOM05D000561 ORTHO05D000514 2.1e-16 89.0 55 72.7
Prupe.5G028700 Prunus persica HOM05D000561 ORTHO05D000514 2.8e-16 88.6 55 72.7
Actinidia16326 Actinidia chinensis HOM05D000561 ORTHO05D000514 3.6e-16 88.2 55 76.4
MD03G1176800 Malus domestica HOM05D000561 ORTHO05D000514 4.7e-16 87.8 56 73.2
Glyma.11G133200 Glycine max HOM05D000561 ORTHO05D000514 6.2e-16 87.4 55 70.9
Cc02_g33880 Coffea canephora HOM05D000561 ORTHO05D000514 8.1e-16 87.0 55 70.9
Actinidia06901 Actinidia chinensis HOM05D000561 ORTHO05D000514 4.0e-15 84.7 55 74.5
Phvul.L009343 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 4.0e-15 84.7 55 70.9
PSO384G1656 Papaver somniferum HOM05D000561 ORTHO05D000514 8.9e-15 83.6 55 63.6
PSO339G4568 Papaver somniferum HOM05D000561 ORTHO05D000514 1.2e-14 83.2 55 63.6
EL10Ac4g10266 Beta vulgaris HOM05D000561 ORTHO05D000514 2.6e-14 82.0 54 70.4
MELO3C005531.2 Cucumis melo HOM05D000561 ORTHO05D000514 2.6e-14 82.0 60 65.0
Lj3g0003681 Lotus japonicus HOM05D000561 ORTHO05D000514 2.6e-14 82.0 55 65.5
Aa31LG11G5050 Aethionema arabicum HOM05D000561 ORTHO05D000514 3.4e-14 81.6 46 82.6
CARHR193610 Cardamine hirsuta HOM05D000561 ORTHO05D000514 3.4e-14 81.6 49 79.6
AL6G30840 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 5.8e-14 80.9 49 79.6
EL10Ac4g10282 Beta vulgaris HOM05D000561 ORTHO05D000514 5.8e-14 80.9 54 68.5
Cfa009761 Carpinus fangiana HOM05D000561 ORTHO05D000514 7.6e-14 80.5 55 69.1
Manes.14G001900 Manihot esculenta HOM05D000561 ORTHO05D000514 7.6e-14 80.5 54 70.4
Oeu001477.2 Olea europaea HOM05D000003 ORTHO05D000514 7.6e-14 80.5 56 67.9
CsaV3_5G004230 Cucumis sativus L. HOM05D000561 ORTHO05D000514 1.3e-13 79.7 60 63.3
Lsat_1_v5_gn_1_66300 Lactuca sativa HOM05D000561 ORTHO05D000514 1.7e-13 79.3 47 78.7
Potri.009G054400 Populus trichocarpa HOM05D000561 ORTHO05D000514 2.2e-13 79.0 55 69.1
Sabra09G0039700 Salix brachista HOM05D000561 ORTHO05D000514 2.2e-13 79.0 55 69.1
Eucgr.J00778 Eucalyptus grandis HOM05D000561 ORTHO05D000514 2.9e-13 78.6 48 70.8
Migut.D00595 Erythranthe guttata HOM05D000561 ORTHO05D000514 3.8e-13 78.2 55 65.5
Carub.0006s1769 Capsella rubella HOM05D000561 ORTHO05D000514 4.9e-13 77.8 49 77.6
THA.LOC104811163 Tarenaya hassleriana HOM05D000561 ORTHO05D000514 4.9e-13 77.8 49 73.5
Lj3g0012879 Lotus japonicus HOM05D000561 ORTHO05D000514 6.4e-13 77.4 56 67.9
Thhalv10013617m.g Eutrema salsugineum HOM05D000561 ORTHO05D000514 1.1e-12 76.6 46 82.6
Ciclev10015576m.g Citrus clementina HOM05D000561 ORTHO05D000514 1.4e-12 76.3 55 65.5
VMungo1127G1920 Vigna mungo HOM05D000561 ORTHO05D000514 1.4e-12 76.3 56 64.3
AT5G19350 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 2.4e-12 75.5 49 73.5
PGR119G1727 Punica granatum HOM05D000561 ORTHO05D000514 2.4e-12 75.5 55 65.5
CDE10G0196 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 3.2e-12 75.1 45 71.1
C09p56930 Brassica napus HOM05D000561 ORTHO05D000514 4.2e-12 74.7 49 75.5
Mapoly0013s0011 Marchantia polymorpha HOM05D000561 ORTHO05D000514 4.2e-12 74.7 61 57.4
A10p20330 Brassica napus HOM05D000561 ORTHO05D000514 5.4e-12 74.3 49 73.5
BraA10t44104Z Brassica rapa HOM05D000561 ORTHO05D000514 5.4e-12 74.3 49 73.5
Lalb_Chr01g0003351 Lupinus albus HOM05D000561 ORTHO05D000514 5.4e-12 74.3 55 67.3
VMungo1080G0863 Vigna mungo HOM05D000561 ORTHO05D000514 5.4e-12 74.3 55 63.6
Zm00001eb005630 Zea mays HOM05D000561 ORTHO05D000514 5.4e-12 74.3 50 76.0
arahy.Tifrunner.gnm1.ann1.Z4F097 Arachis hypogaea HOM05D000561 ORTHO05D000514 7.1e-12 73.9 52 67.3
CiPaw.14G119600 Carya illinoinensis HOM05D000561 ORTHO05D000514 7.1e-12 73.9 45 73.3
BcaB01g04865 Brassica carinata HOM05D000561 ORTHO05D000514 9.3e-12 73.6 49 73.5
BcaNung07025 Brassica carinata HOM05D000561 ORTHO05D000514 9.3e-12 73.6 49 73.5
BolC9t58547H Brassica oleracea HOM05D000561 ORTHO05D000514 2.1e-11 72.4 46 76.1
Nn1g03553 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.7e-11 72.0 59 61.0
SalBow2G0499 Salvia bowleyana HOM05D000561 ORTHO05D000514 3.5e-11 71.6 55 63.6
BcaB01g05142 Brassica carinata HOM05D000561 ORTHO05D000514 7.8e-11 70.5 46 73.9
A03p09450 Brassica napus HOM05D000561 ORTHO05D000514 7.8e-11 70.5 46 73.9
C03p11030 Brassica napus HOM05D000561 ORTHO05D000514 7.8e-11 70.5 46 73.9
BolC3t13572H Brassica oleracea HOM05D000561 ORTHO05D000514 7.8e-11 70.5 46 73.9
BraA03t10263Z Brassica rapa HOM05D000561 ORTHO05D000514 7.8e-11 70.5 46 73.9
Sp6g25060 Schrenkiella parvula HOM05D000561 ORTHO05D000514 1.0e-10 70.1 46 78.3
DCAR_029947 Daucus carota HOM05D000561 ORTHO05D000514 1.3e-10 69.7 55 56.4
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.3e-10 69.7 53 60.4
Os03g0174100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 1.3e-10 69.7 50 72.0
arahy.Tifrunner.gnm1.ann1.GE7Z65 Arachis hypogaea HOM05D000561 ORTHO05D000514 3.0e-10 68.6 42 73.8
AUR62000109 Chenopodium quinoa HOM05D000561 ORTHO05D000514 3.9e-10 68.2 46 67.4
AUR62019286 Chenopodium quinoa HOM05D000561 ORTHO05D000514 5.1e-10 67.8 46 67.4
ClCG01G004050 Citrullus lanatus HOM05D000561 ORTHO05D000514 5.1e-10 67.8 51 62.7
Ca_01295_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 6.6e-10 67.4 43 69.8
Sc16g0011530 Simmondsia chinensis HOM05D000561 ORTHO05D000514 6.6e-10 67.4 61 52.5
SEGI_02787 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 8.7e-10 67.0 52 61.5
Sed0011306 Sechium edule HOM05D000561 ORTHO05D000514 1.5e-09 66.2 49 67.3
HPP92_005831 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.5e-09 66.2 48 62.5
HPP92_005856 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.5e-09 66.2 48 62.5
HPP92_005912 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.5e-09 66.2 48 62.5
MSTRG.21383 Avicennia marina HOM05D000561 ORTHO05D000514 1.9e-09 65.9 55 60.0
CANSAT54G1581 Cannabis sativa HOM05D000561 ORTHO05D000514 1.9e-09 65.9 56 58.9
ATR0752G101 Amborella trichopoda HOM05D000561 ORTHO05D000514 2.5e-09 65.5 55 58.2
MBI02_g22113_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D000514 5.6e-09 64.3 59 54.2
SEGI_29644 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 7.3e-09 63.9 49 61.2
TPR.G6890 Trifolium pratense HOM05D000561 ORTHO05D000514 9.6e-09 63.5 47 61.7
Manes.03G128501 Manihot esculenta HOM05D000561 ORTHO05D000514 1.3e-08 63.2 45 62.2
FvH4_1g30440 Fragaria vesca HOM05D000561 ORTHO05D000514 3.6e-08 61.6 56 51.8
Psat5g286480 Pisum sativum HOM05D000561 ORTHO05D000514 4.8e-08 61.2 44 63.6
Manes.15G072700 Manihot esculenta HOM05D000561 ORTHO05D000514 6.2e-08 60.8 45 60.0
HPP92_006294 Vanilla planifolia HOM05D000561 ORTHO05D000514 6.2e-08 60.8 54 53.7
HPP92_006315 Vanilla planifolia HOM05D000561 ORTHO05D000514 6.2e-08 60.8 54 53.7
Duzib150G0013 Durio zibethinus HOM05D000561 ORTHO05D000514 8.1e-08 60.5 46 63.0
Medtr2g097960 Medicago truncatula HOM05D000561 ORTHO05D000514 8.1e-08 60.5 44 63.6
CDE02G4501 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.4e-07 59.7 50 56.0
CDE05G3198 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.4e-07 59.7 48 56.2
HPP92_016294 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.4e-07 59.7 50 56.0
HPP92_024152 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.4e-07 59.7 54 55.6
HPP92_024194 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.8e-07 59.3 54 55.6
CDE06G2223 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 2.4e-07 58.9 39 64.1
HPP92_016314 Vanilla planifolia HOM05D000561 ORTHO05D000514 2.4e-07 58.9 50 56.0
CDE05G1060 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 5.3e-07 57.8 56 53.6
Os08g0190200 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 6.9e-07 57.4 48 54.2
Zm00001eb219820 Zea mays HOM05D000561 ORTHO05D000514 1.2e-06 56.6 48 60.4
Nitab4.5_0001913g0110 Nicotiana tabacum HOM05D000561 ORTHO05D000514 1.5e-06 56.2 55 54.5
Peaxi162Scf00964g00153 Petunia axillaris HOM05D000561 ORTHO05D000514 1.5e-06 56.2 53 56.6
GSVIVG01037635001 Vitis vinifera HOM05D000561 ORTHO05D000514 1.5e-06 56.2 48 56.2
Hma1.2p1_0673F.1_g201260 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 2.0e-06 55.8 48 56.2
Os03g0569900 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 2.0e-06 55.8 53 54.7
FAN19G1629 Fragaria x ananassa HOM05D000561 ORTHO05D000514 2.6e-06 55.5 46 54.3
Gohir.A08G019900 Gossypium hirsutum HOM05D000561 ORTHO05D000514 2.6e-06 55.5 53 54.7
Gohir.D08G030400 Gossypium hirsutum HOM05D000561 ORTHO05D000514 2.6e-06 55.5 53 54.7
Gorai.004G028000 Gossypium raimondii HOM05D000561 ORTHO05D000514 2.6e-06 55.5 53 54.7
Zm00001eb171480 Zea mays HOM05D000561 ORTHO05D000514 2.6e-06 55.5 51 54.9
Gohir.D13G143300 Gossypium hirsutum HOM05D000561 ORTHO05D000514 3.4e-06 55.1 47 57.4
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.4e-06 55.1 54 51.9
SEGI_14452 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 3.4e-06 55.1 49 57.1
vmacro11729 Vaccinium macrocarpon HOM05D000561 ORTHO05D000514 3.4e-06 55.1 54 51.9
Gohir.D01G066200 Gossypium hirsutum HOM05D000561 ORTHO05D000514 4.4e-06 54.7 46 56.5
Gorai.002G088100 Gossypium raimondii HOM05D000561 ORTHO05D000514 4.4e-06 54.7 46 56.5
Nitab4.5_0003812g0050 Nicotiana tabacum HOM05D000561 ORTHO05D000514 4.4e-06 54.7 55 52.7
Peaxi162Scf00079g01415 Petunia axillaris HOM05D000561 ORTHO05D000514 4.4e-06 54.7 52 57.7
arahy.Tifrunner.gnm1.ann1.3CX1XJ Arachis hypogaea HOM05D000561 ORTHO05D000514 5.8e-06 54.3 51 58.8
arahy.Tifrunner.gnm1.ann1.X24ZF9 Arachis hypogaea HOM05D000561 ORTHO05D000514 5.8e-06 54.3 51 58.8
SalBow8G1719 Salvia bowleyana HOM05D000561 ORTHO05D000514 5.8e-06 54.3 48 56.2
RcHm_v2.0_Chr3g0491021 Rosa chinensis HOM05D000561 ORTHO05D000514 9.9e-06 53.5 46 54.3


User provided reference genes

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