Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 0.0e+00 1075.1 539 100.0
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.0e-244 849.0 534 80.0
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.0e-231 805.8 539 76.6
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.7e-230 801.6 535 76.6
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.7e-219 766.1 532 72.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.6e-219 764.2 531 73.4
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 8.6e-219 763.8 540 71.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 8.1e-217 757.3 533 73.0
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.3e-216 755.7 537 70.2
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 5.8e-215 751.1 539 71.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.4e-213 745.7 535 69.7
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.2e-212 743.4 539 69.4
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.2e-212 743.4 531 70.8
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 3.5e-212 741.9 539 69.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 2.5e-210 735.7 532 69.5
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.1e-209 730.7 534 69.1
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 8.1e-209 730.7 532 69.0
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 3.1e-208 728.8 502 71.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 4.0e-208 728.4 532 69.7
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 4.4e-207 724.9 532 69.2
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.2e-206 722.6 556 66.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 4.9e-206 721.5 537 67.6
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 7.1e-205 717.6 510 69.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 9.2e-205 717.2 536 67.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.3e-203 713.4 510 70.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.0e-203 712.2 508 69.3
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.9e-202 709.5 524 68.5
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 4.3e-202 708.4 529 69.0
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.6e-201 706.4 532 67.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.8e-201 705.7 525 69.0
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.7e-201 704.9 475 72.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.8e-200 703.0 538 66.0
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 6.9e-200 701.0 531 67.8
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.6e-199 699.1 516 68.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 3.4e-199 698.7 538 66.4
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.4e-199 698.7 524 66.8
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.9e-198 695.7 536 65.9
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 3.8e-198 695.3 514 68.9
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 4.9e-198 694.9 525 67.0
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.9e-197 693.0 538 67.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 7.1e-197 691.0 538 66.9
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.1e-196 689.5 509 67.4
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.7e-196 689.1 533 65.9
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 7.8e-196 687.6 553 63.3
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.3e-195 686.8 523 67.5
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.7e-195 686.4 543 69.2
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.1e-195 684.9 552 63.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 5.1e-195 684.9 512 67.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.7e-195 684.1 536 64.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 9.6e-194 680.6 534 66.7
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-192 676.8 515 66.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.4e-192 676.0 536 63.1
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.3e-190 670.2 552 63.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 6.4e-190 667.9 492 67.3
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.1e-189 667.2 514 65.4
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.4e-189 666.8 534 61.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.7e-188 662.5 532 61.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.6e-188 661.8 495 66.9
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-187 660.6 546 61.5
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-187 660.6 517 64.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 2.3e-187 659.4 540 61.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 3.0e-187 659.1 524 64.5
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 8.7e-187 657.5 544 62.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.9e-186 656.4 527 64.3
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.5e-186 656.0 523 63.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.5e-186 656.0 480 69.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.8e-185 652.5 531 62.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.1e-184 649.0 530 64.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.5e-183 645.2 506 67.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.8e-183 644.8 573 57.4
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 2.9e-182 642.5 530 62.1
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.9e-182 642.5 525 61.5
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.8e-182 642.1 524 63.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.2e-181 639.0 524 59.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.9e-180 634.4 495 65.7
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.7e-179 631.3 417 75.1
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 3.3e-178 629.0 527 62.8
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 4.8e-177 625.2 610 55.6
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.0e-176 620.9 524 63.0
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.6e-175 617.8 411 77.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 7.1e-173 611.3 539 57.5
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 9.3e-173 610.9 513 63.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.1e-172 609.8 526 59.5
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.1e-172 609.8 535 63.7
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.7e-172 609.4 521 59.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 9.7e-170 600.9 535 58.7
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 8.5e-166 587.8 521 57.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 3.6e-164 582.4 491 61.9
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 5.7e-162 575.1 522 57.9
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-160 570.5 502 58.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.1e-160 567.8 428 68.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 4.5e-159 565.5 507 57.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-158 563.1 506 57.7
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 5.5e-157 558.5 535 56.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 7.9e-156 554.7 491 57.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-155 553.5 539 55.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.0e-155 552.7 488 57.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.7e-155 551.6 526 55.9
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.8e-152 543.5 454 59.5
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.5e-151 539.3 537 53.8
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.9e-149 533.5 500 54.4
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-149 533.1 501 55.5
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 7.4e-146 521.5 545 55.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.1e-144 516.2 462 60.8
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-144 515.0 496 55.6
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.2e-140 504.2 399 62.7
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.6e-140 503.8 514 52.5
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 9.7e-138 494.6 494 53.4
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.8e-137 492.3 484 53.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-136 490.0 492 53.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.4e-136 490.0 447 55.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 6.5e-134 481.9 334 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 8.5e-134 481.5 510 49.6
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.7e-132 476.5 398 59.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.0e-131 474.6 498 49.4
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.5e-130 470.7 293 78.5
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.6e-130 469.9 347 68.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 7.5e-130 468.4 509 48.9
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.4e-128 464.2 404 62.6
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.6e-124 450.7 329 67.2
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 8.0e-124 448.4 335 66.6
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-119 434.1 464 50.2
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.8e-114 415.6 416 54.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.7e-113 414.1 340 62.9
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.7e-113 412.9 345 62.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.2e-112 408.3 346 57.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.6e-103 379.4 642 36.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 5.6e-101 372.5 447 49.7
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.3e-97 361.3 290 64.5
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.6e-87 326.2 280 56.8
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.6e-85 318.5 248 60.5
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.6e-84 316.6 460 42.6
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-80 304.7 239 59.8
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.0e-79 299.3 348 45.7
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 3.0e-70 270.4 650 31.1
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-67 260.8 263 52.9
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 5.1e-62 243.0 186 67.7
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.5e-61 240.7 190 65.3
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.5e-61 240.7 180 67.2
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.8e-60 237.3 179 67.0
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-59 235.3 179 66.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.1e-59 233.8 474 34.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.0e-57 228.8 188 62.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.2e-57 227.6 146 76.0
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-54 216.9 204 52.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.7e-47 194.1 125 75.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.0e-46 192.2 186 55.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 4.3e-45 186.8 178 53.9
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-41 175.3 188 51.6
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.2e-40 170.2 204 45.6
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-38 164.9 176 46.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.4e-37 159.5 130 62.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.2e-36 156.0 143 59.4
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.5e-34 150.6 118 64.4
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 4.0e-30 137.1 188 43.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.0e-27 126.3 98 63.3
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-26 125.2 76 75.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.7e-18 96.3 84 46.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.9e-16 91.7 66 62.1
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.6e-15 88.6 73 61.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.1e-15 88.2 73 58.9
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.3e-12 79.0 64 62.5


User provided reference genes

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