Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 0.0e+00 1084.3 576 100.0
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 8.1e-308 1059.7 583 97.8
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 3.1e-230 802.0 562 76.0
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 4.1e-227 791.6 561 76.1
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 8.3e-212 740.7 573 72.6
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 5.8e-205 718.0 559 69.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 2.4e-203 712.6 557 68.6
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.2e-202 710.3 555 68.8
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 9.6e-200 700.7 552 69.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.2e-199 700.3 561 68.3
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.1e-199 699.5 556 68.5
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 8.1e-199 697.6 531 70.6
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.4e-198 696.8 552 68.3
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 4.0e-198 695.3 540 68.1
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.0e-198 695.3 553 68.7
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.0e-197 693.0 552 68.3
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 2.2e-196 689.5 564 66.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.4e-195 686.0 551 66.8
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.2e-195 685.6 554 66.4
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.2e-194 683.7 560 65.9
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.1e-194 682.9 560 65.5
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.8e-191 672.5 537 67.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 8.1e-191 671.0 564 64.0
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 1.4e-190 670.2 558 64.9
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 5.3e-190 668.3 466 73.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.6e-189 666.0 450 75.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 5.8e-189 664.8 484 72.7
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.3e-188 663.7 461 74.8
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.4e-187 660.2 461 74.2
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 3.2e-187 659.1 460 75.4
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 4.2e-187 658.7 551 63.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.7e-186 656.0 551 63.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 2.7e-186 656.0 461 73.5
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 6.0e-186 654.8 461 73.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 3.9e-185 652.1 439 73.8
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 5.1e-185 651.7 553 62.2
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 8.7e-185 651.0 563 62.9
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 5.6e-184 648.3 560 63.4
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 7.4e-184 647.9 528 65.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.8e-183 645.2 470 72.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 8.1e-183 644.4 562 62.5
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.4e-182 643.7 557 64.1
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 2.4e-182 642.9 461 72.2
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.4e-182 642.9 552 62.5
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 5.3e-182 641.7 562 62.3
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 1.2e-181 640.6 601 59.9
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 7.6e-181 637.9 567 61.9
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 7.6e-181 637.9 560 61.1
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 1.3e-180 637.1 553 64.9
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.9e-180 636.0 559 62.1
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 2.5e-179 632.9 558 61.8
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 5.5e-179 631.7 461 69.4
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 6.0e-178 628.2 562 61.9
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.8e-177 626.7 538 63.6
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 2.3e-177 626.3 560 61.4
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.7e-177 624.8 520 65.8
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.1e-176 624.0 551 60.4
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.9e-176 623.2 511 65.6
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 2.5e-176 622.9 562 61.9
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.6e-175 620.2 556 62.1
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.6e-175 620.2 559 60.5
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.1e-175 619.8 514 64.2
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.8e-175 618.6 536 64.2
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.8e-175 618.6 536 63.6
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.2e-175 618.2 536 63.6
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 6.2e-175 618.2 529 64.1
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.4e-174 616.3 537 63.7
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.1e-174 615.9 537 63.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 3.1e-174 615.9 566 60.2
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 5.3e-174 615.1 554 62.6
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 6.9e-174 614.8 571 60.6
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 9.0e-174 614.4 558 61.1
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.0e-173 613.2 514 63.6
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.6e-173 612.8 523 64.1
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 3.4e-173 612.5 578 59.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 1.7e-172 610.1 503 65.4
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.9e-171 606.7 433 70.7
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.6e-170 602.1 556 59.0
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 7.9e-170 601.3 556 59.0
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.0e-169 600.9 556 59.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 2.3e-169 599.7 532 60.7
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 2.3e-169 599.7 550 62.9
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 5.7e-168 595.1 556 58.6
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 5.7e-168 595.1 434 69.8
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.6e-167 593.6 499 63.3
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.2e-167 593.2 555 59.5
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 2.8e-167 592.8 556 58.5
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 3.7e-167 592.4 558 58.8
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 6.3e-167 591.7 563 58.4
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.4e-165 585.9 563 59.0
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 3.4e-165 585.9 552 58.7
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 8.5e-164 581.3 414 69.1
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.5e-163 579.7 462 65.8
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 3.0e-161 572.8 472 65.0
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.4e-158 563.9 686 49.6
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.9e-158 561.6 548 58.2
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 3.6e-154 549.3 564 55.9
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 1.8e-153 547.0 449 64.4
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 5.9e-149 531.9 541 55.5
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-146 523.9 410 65.1
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 8.8e-145 518.1 509 55.4
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.4e-142 510.8 462 60.6
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.1e-139 501.1 353 73.7
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 3.2e-139 499.6 391 68.8
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.2e-136 491.1 533 51.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.3e-135 487.6 367 70.8
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.0e-132 478.0 501 52.7
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 1.2e-112 411.4 433 55.0
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 7.8e-109 398.7 554 46.8
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.3e-105 387.1 326 66.3
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 7.1e-102 375.6 512 47.5
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 7.6e-96 355.5 391 50.4
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.7e-92 344.4 287 58.9
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 6.2e-90 335.9 258 67.4
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.8e-74 283.9 245 65.7
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.9e-71 273.9 511 36.0
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 5.1e-68 263.1 291 52.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 6.2e-66 256.1 290 46.2
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 3.2e-54 217.2 418 33.7
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.5e-48 198.4 254 45.7
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 9.1e-41 172.6 243 44.9
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.6e-35 154.5 120 60.0
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.1e-33 147.1 95 74.7
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 5.0e-31 140.2 226 32.7
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 8.8e-28 129.4 176 43.8
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 6.3e-26 123.2 80 72.5
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 8.5e-23 112.8 62 80.6
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.5e-19 99.8 172 48.8
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.4e-17 93.6 81 55.6
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 4.3e-06 57.4 49 61.2


User provided reference genes

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