Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 7.1e-132 474.2 280 100.0
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.0e-130 470.3 280 98.9
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.5e-94 348.6 275 69.5
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 1.7e-85 320.1 273 60.8
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 3.2e-84 315.8 216 72.7
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 4.2e-84 315.5 204 77.0
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 6.1e-83 311.6 210 71.9
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 7.9e-83 311.2 214 72.0
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.1e-81 307.4 277 58.8
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 2.0e-81 306.6 212 70.8
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.7e-80 303.5 270 60.4
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.2e-80 303.1 282 59.2
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 3.7e-80 302.4 276 60.1
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 4.8e-80 302.0 203 74.9
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.1e-79 300.8 210 69.5
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.1e-79 300.8 283 62.2
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.4e-79 299.7 253 76.7
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 5.3e-79 298.5 204 72.1
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.0e-78 296.6 187 77.0
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.0e-77 294.3 210 70.0
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 1.3e-77 293.9 207 67.1
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 2.2e-77 293.1 275 63.3
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 6.5e-77 291.6 211 71.1
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 2.5e-76 289.7 203 69.0
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 2.5e-76 289.7 205 70.7
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 3.2e-76 289.3 216 66.2
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 5.5e-76 288.5 300 56.0
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 9.4e-76 287.7 213 68.1
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 9.4e-76 287.7 203 68.0
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.2e-75 287.3 279 65.6
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.6e-75 287.0 284 64.8
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 1.6e-75 287.0 197 71.1
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.6e-75 287.0 211 69.2
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 2.7e-75 286.2 271 55.7
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 4.7e-75 285.4 206 67.0
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.7e-75 285.4 182 76.4
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 6.1e-75 285.0 211 65.9
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 8.0e-75 284.6 209 65.1
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 8.0e-75 284.6 280 55.7
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.0e-74 284.3 253 58.5
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.4e-74 283.9 209 65.6
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 3.0e-74 282.7 237 59.9
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.9e-74 282.3 206 66.5
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 5.2e-74 282.0 207 66.2
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 6.7e-74 281.6 257 56.4
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 1.1e-73 280.8 204 68.1
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.6
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.6
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.5e-73 280.4 209 64.6
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.5e-73 280.4 208 64.4
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 1.5e-73 280.4 198 69.7
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.0e-73 280.0 223 62.8
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.0e-73 280.0 286 58.7
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.7e-73 278.5 258 58.1
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 7.4e-73 278.1 205 67.3
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.7e-72 276.9 212 64.2
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 2.2e-72 276.6 211 64.9
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.7e-72 275.8 205 65.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.8e-72 275.4 268 56.7
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 1.1e-71 274.2 204 66.7
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.4e-71 273.9 204 66.2
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.4e-71 273.9 199 67.3
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.4e-71 273.9 207 64.3
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.1e-71 272.3 204 66.7
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 7.0e-71 271.6 204 66.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.2e-70 270.8 200 67.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.2e-70 270.8 240 57.9
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.2e-70 270.8 268 56.0
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.6e-70 270.4 204 66.2
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 1.6e-70 270.4 219 61.6
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.5e-70 268.9 191 69.1
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.0e-69 267.7 252 66.7
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.3e-69 267.3 203 64.5
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 3.8e-69 265.8 272 58.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 8.5e-69 264.6 218 62.4
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.6e-67 260.4 204 63.2
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 1.6e-67 260.4 209 62.2
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 3.6e-67 259.2 211 61.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.3e-66 256.5 213 60.1
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 3.4e-65 252.7 204 59.8
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 4.8e-64 248.8 178 71.3
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 8.3e-64 248.1 175 69.7
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.4e-63 247.3 198 61.1
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.4e-63 247.3 184 67.4
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.8e-63 246.9 202 62.4
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.1e-63 246.1 201 61.7
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 4.1e-63 245.7 176 69.9
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 5.4e-63 245.4 174 70.1
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 5.4e-63 245.4 212 59.4
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 3.2e-60 236.1 189 61.4
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 1.2e-59 234.2 175 70.9
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.6e-59 233.8 201 56.2
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 6.1e-59 231.9 188 60.1
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 8.8e-58 228.0 204 58.8
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 5.7e-57 225.3 227 54.6
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.9e-56 222.2 203 57.6
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.5e-52 209.9 164 64.0
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.2e-52 209.1 299 49.2
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.4e-50 204.1 211 52.1
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.3e-50 203.4 326 45.4
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 6.3e-48 195.3 172 56.4
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.7e-46 189.9 197 46.7
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.2e-43 181.0 217 47.5
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.6e-43 180.6 103 87.4
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 1.0e-42 177.9 124 66.9
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 2.0e-41 173.7 184 56.0
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.4e-40 168.7 136 63.2
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.4e-39 167.5 203 42.4
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 1.0e-37 161.4 197 41.6
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 5.6e-36 155.6 165 46.7
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.0e-34 149.4 285 42.5
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 5.2e-34 149.1 88 80.7
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 8.9e-34 148.3 193 42.0
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.2e-33 147.9 88 80.7
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 9.8e-33 144.8 88 77.3
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 3.7e-32 142.9 123 56.1
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 4.9e-32 142.5 161 50.9
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.4e-31 140.2 207 53.6
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 4.0e-26 122.9 117 53.8
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 1.5e-25 120.9 82 68.3
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 4.3e-20 102.8 172 53.5
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.4e-18 97.1 62 74.2
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.2e-09 68.2 153 31.4
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 9.9e-09 65.1 48 60.4
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.4e-07 61.2 51 54.9
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 2.7e-06 57.0 43 67.4


User provided reference genes

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