Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002316 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D113136 2.9e-48 194.9 98 100.0
CSS0025450 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D003310 9.7e-20 100.1 86 62.8
vmacro02534 Vaccinium macrocarpon HOM05D002837 ORTHO05D003310 6.8e-13 77.4 84 56.0
Actinidia28675 Actinidia chinensis HOM05D002837 ORTHO05D003310 1.5e-12 76.3 85 51.8
Potri.014G136900 Populus trichocarpa HOM05D002837 ORTHO05D003310 3.4e-12 75.1 85 50.6
Dinv11269 Davidia involucrata HOM05D002837 ORTHO05D003310 7.5e-12 73.9 83 51.8
CSS0043373 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D003310 1.3e-11 73.2 85 52.9
Thecc.01G286400 Theobroma cacao HOM05D002837 ORTHO05D003310 2.2e-11 72.4 85 49.4
Gohir.A08G184900 Gossypium hirsutum HOM05D002837 ORTHO05D003310 2.8e-11 72.0 87 50.6
Manes.05G071500 Manihot esculenta HOM05D002837 ORTHO05D003310 3.7e-11 71.6 84 52.4
Duzib133G0554 Durio zibethinus HOM05D002837 ORTHO05D003310 4.8e-11 71.2 88 51.1
Gorai.004G215000 Gossypium raimondii HOM05D002837 ORTHO05D003310 6.3e-11 70.9 87 50.6
Gohir.D08G203000 Gossypium hirsutum HOM05D002837 ORTHO05D003310 8.3e-11 70.5 87 52.9
Oeu001444.1 Olea europaea HOM05D002837 ORTHO05D003310 8.3e-11 70.5 85 49.4
QL12p023058 Quercus lobata HOM05D002837 ORTHO05D003310 8.3e-11 70.5 85 47.1
GSVIVG01011054001 Vitis vinifera HOM05D002837 ORTHO05D003310 8.3e-11 70.5 81 50.6
Manes.01G211500 Manihot esculenta HOM05D002837 ORTHO05D003310 1.1e-10 70.1 83 50.6
QL93p0279_0049 Quercus lobata HOM05D002837 ORTHO05D003310 2.4e-10 68.9 85 45.9
TAR365G0323 Trochodendron aralioides HOM05D002837 ORTHO05D003310 2.4e-10 68.9 84 47.6
TAR633G2516 Trochodendron aralioides HOM05D002837 ORTHO05D003310 2.4e-10 68.9 84 45.2
Cfa006074 Carpinus fangiana HOM05D002837 ORTHO05D003310 4.1e-10 68.2 84 46.4
Haze_04776 Corylus avellana HOM05D002837 ORTHO05D003310 5.4e-10 67.8 84 46.4
Rhsim13G0020800 Rhododendron simsii HOM05D002837 ORTHO05D003310 7.0e-10 67.4 82 52.4
Lj1A42G56 Lonicera japonica HOM05D002837 ORTHO05D003310 9.1e-10 67.0 83 47.0
Peaxi162Scf02085g00005 Petunia axillaris HOM05D002837 ORTHO05D003310 9.1e-10 67.0 83 47.0
SGA_v2.0_scaffold1G00436 Striga asiatica HOM05D002837 ORTHO05D003310 1.2e-09 66.6 87 47.1
TWI14G0002 Tripterygium wilfordii HOM05D002837 ORTHO05D003310 1.6e-09 66.2 90 42.2
Lj5g0002276 Lotus japonicus HOM05D002837 ORTHO05D003310 2.0e-09 65.9 90 42.2
Lj5g0009693 Lotus japonicus HOM05D002837 ORTHO05D003310 2.0e-09 65.9 90 42.2
Nitab4.5_0010926g0010 Nicotiana tabacum HOM05D002837 ORTHO05D003310 2.0e-09 65.9 83 44.6
Lj2A1219T38 Lonicera japonica HOM05D002837 ORTHO05D003310 2.7e-09 65.5 89 44.9
Cc01_g19890 Coffea canephora HOM05D002837 ORTHO05D003310 3.5e-09 65.1 85 45.9
DCAR_005826 Daucus carota HOM05D002837 ORTHO05D003310 3.5e-09 65.1 87 46.0
Duzib138G0761 Durio zibethinus HOM05D002837 ORTHO05D003310 3.5e-09 65.1 86 48.8
VMungo0720G1936 Vigna mungo HOM05D002837 ORTHO05D003310 3.5e-09 65.1 85 42.4
Nn4g26121 Nelumbo nucifera HOM05D002837 ORTHO05D003310 4.5e-09 64.7 83 42.2
Gohir.A11G119500 Gossypium hirsutum HOM05D002837 ORTHO05D003310 5.9e-09 64.3 89 46.1
Gohir.D11G124300 Gossypium hirsutum HOM05D002837 ORTHO05D003310 5.9e-09 64.3 89 46.1
Gorai.007G133200 Gossypium raimondii HOM05D002837 ORTHO05D003310 5.9e-09 64.3 89 46.1
Aqoxy5G00569 Aquilegia oxysepala HOM05D002837 ORTHO05D003310 1.0e-08 63.5 81 44.4
CANSAT25G0516 Cannabis sativa HOM05D002837 ORTHO05D003310 1.0e-08 63.5 85 43.5
Glyma.19G152500 Glycine max HOM05D002837 ORTHO05D003310 1.0e-08 63.5 89 41.6
Atru.chr5.1324 Acer truncatum HOM05D002837 ORTHO05D003310 1.3e-08 63.2 85 47.1
Migut.D00998 Erythranthe guttata HOM05D002837 ORTHO05D003310 1.3e-08 63.2 84 46.4
Glyma.02G150550 Glycine max HOM05D002837 ORTHO05D003310 1.3e-08 63.2 86 41.9
MD11G1292900 Malus domestica HOM05D002837 ORTHO05D003310 1.3e-08 63.2 83 45.8
Hund05362 Selenicereus undatus HOM05D002837 ORTHO05D003310 1.3e-08 63.2 84 44.0
HanXRQChr01g0003211 Helianthus annuus HOM05D002837 ORTHO05D003310 1.7e-08 62.8 83 49.4
Nitab4.5_0001323g0130 Nicotiana tabacum HOM05D002837 ORTHO05D003310 1.7e-08 62.8 83 43.4
QL06p006327 Quercus lobata HOM05D002837 ORTHO05D003310 1.7e-08 62.8 86 44.2
Ciclev10019778m.g Citrus clementina HOM05D002837 ORTHO05D003310 2.2e-08 62.4 84 47.6
Lalb_Chr06g0163211 Lupinus albus HOM05D002837 ORTHO05D003310 2.2e-08 62.4 89 42.7
MD03G1272200 Malus domestica HOM05D002837 ORTHO05D003310 2.9e-08 62.0 83 44.6
Prupe.8G248300 Prunus persica HOM05D002837 ORTHO05D003310 3.8e-08 61.6 83 47.0
EL10Ac7g17186 Beta vulgaris HOM05D002837 ORTHO05D003310 5.0e-08 61.2 84 42.9
CiPaw.07G096500 Carya illinoinensis HOM05D002837 ORTHO05D003310 5.0e-08 61.2 90 42.2
FvH4_2g24230 Fragaria vesca HOM05D002837 ORTHO05D003310 5.0e-08 61.2 84 45.2
FAN15G0237 Fragaria x ananassa HOM05D002837 ORTHO05D003310 5.0e-08 61.2 84 45.2
FAN20G0997 Fragaria x ananassa HOM05D002837 ORTHO05D003310 5.0e-08 61.2 84 45.2
Haze_01013 Corylus avellana HOM05D002837 ORTHO05D003310 6.5e-08 60.8 84 41.7
Ca_10392_v3 Cicer arietinum L. HOM05D002837 ORTHO05D003310 8.5e-08 60.5 86 41.9
Hma1.2p1_0257F.1_g103900 Hydrangea macrophylla HOM05D002837 ORTHO05D003310 8.5e-08 60.5 84 45.2
AUR62034576 Chenopodium quinoa HOM05D002837 ORTHO05D003310 1.1e-07 60.1 85 43.5
Glyma.03G149500 Glycine max HOM05D002837 ORTHO05D003310 1.1e-07 60.1 89 39.3
GSVIVG01017848001 Vitis vinifera HOM05D002837 ORTHO05D003310 1.1e-07 60.1 82 43.9
Lsat_1_v5_gn_5_188541 Lactuca sativa HOM05D002837 ORTHO05D003310 1.5e-07 59.7 76 51.3
Lj6g0014033 Lotus japonicus HOM05D002837 ORTHO05D003310 1.5e-07 59.7 72 45.8
RcHm_v2.0_Chr6g0292041 Rosa chinensis HOM05D002837 ORTHO05D003310 1.9e-07 59.3 84 46.4
TAR362G0780 Trochodendron aralioides HOM05D002837 ORTHO05D003310 1.9e-07 59.3 77 44.2
Manes.15G020000 Manihot esculenta HOM05D002837 ORTHO05D003310 2.5e-07 58.9 83 41.0
Solyc09g074210.3 Solanum lycopersicum HOM05D002837 ORTHO05D003310 2.5e-07 58.9 83 43.4
Sopen09g029030 Solanum pennellii HOM05D002837 ORTHO05D003310 2.5e-07 58.9 83 43.4
arahy.Tifrunner.gnm1.ann1.D36X90 Arachis hypogaea HOM05D002837 ORTHO05D003310 3.2e-07 58.5 91 41.8
arahy.Tifrunner.gnm1.ann1.QC4E5N Arachis hypogaea HOM05D002837 ORTHO05D003310 3.2e-07 58.5 91 41.8
MSTRG.21586 Avicennia marina HOM05D002837 ORTHO05D003310 3.2e-07 58.5 86 44.2
Glyma.10G023500 Glycine max HOM05D002837 ORTHO05D003310 3.2e-07 58.5 86 40.7
Lalb_Chr15g0087161 Lupinus albus HOM05D002837 ORTHO05D003310 3.2e-07 58.5 72 44.4
Phvul.001G147400 Phaseolus vulgaris HOM05D002837 ORTHO05D003310 4.2e-07 58.2 83 39.8
AUR62033684 Chenopodium quinoa HOM05D002837 ORTHO05D003310 5.5e-07 57.8 85 42.4
Cc03_g02710 Coffea canephora HOM05D002837 ORTHO05D003310 5.5e-07 57.8 83 41.0
TPR.G18037 Trifolium pratense HOM05D002837 ORTHO05D003310 5.5e-07 57.8 70 45.7
Duzib151G0088 Durio zibethinus HOM05D002837 ORTHO05D003310 7.2e-07 57.4 83 42.2
Lalb_Chr02g0142951 Lupinus albus HOM05D002837 ORTHO05D003310 7.2e-07 57.4 85 38.8
Sabra14G0103300 Salix brachista HOM05D002837 ORTHO05D003310 7.2e-07 57.4 76 43.4
Cpa.g.sc9.134 Carica papaya HOM05D002837 ORTHO05D003310 9.4e-07 57.0 83 43.4
HPP92_018425 Vanilla planifolia HOM05D002837 ORTHO05D003310 9.4e-07 57.0 81 37.0
Medtr2g020860 Medicago truncatula HOM05D002837 ORTHO05D003310 1.2e-06 56.6 72 44.4
Thecc.04G273000 Theobroma cacao HOM05D002837 ORTHO05D003310 1.2e-06 56.6 85 42.4
Ciclev10005134m.g Citrus clementina HOM05D002837 ORTHO05D003310 2.1e-06 55.8 79 40.5
HanXRQChr11g0338481 Helianthus annuus HOM05D002837 ORTHO05D003310 2.1e-06 55.8 83 45.8
Glyma.15G100400 Glycine max HOM05D002837 ORTHO05D003310 2.7e-06 55.5 70 44.3
Hma1.2p1_2318F.1_g319760 Hydrangea macrophylla HOM05D002837 ORTHO05D003310 2.7e-06 55.5 83 42.2
PGSC0003DMG400003812 Solanum tuberosum HOM05D002837 ORTHO05D003310 2.7e-06 55.5 83 41.0
Phvul.007G168200 Phaseolus vulgaris HOM05D002837 ORTHO05D003310 3.6e-06 55.1 85 38.8
Cpa.g.sc16.76 Carica papaya HOM05D002837 ORTHO05D003310 4.7e-06 54.7 84 41.7
CiPaw.01G156400 Carya illinoinensis HOM05D002837 ORTHO05D003310 4.7e-06 54.7 83 39.8
Ca_00587_v3 Cicer arietinum L. HOM05D002837 ORTHO05D003310 4.7e-06 54.7 72 43.1
Glyma.13G212300 Glycine max HOM05D002837 ORTHO05D003310 6.1e-06 54.3 70 42.9
Psat6g169640 Pisum sativum HOM05D002837 ORTHO05D003310 6.1e-06 54.3 72 43.1
Gohir.D10G163100 Gossypium hirsutum HOM05D002837 ORTHO05D003310 8.0e-06 53.9 70 45.7
Gorai.011G182000 Gossypium raimondii HOM05D002837 ORTHO05D003310 8.0e-06 53.9 70 45.7
MBI19_g30165_MAGBIO Magnolia biondii HOM05D002837 ORTHO05D003310 8.0e-06 53.9 84 44.0
VMungo1383G2403 Vigna mungo HOM05D002837 ORTHO05D003310 8.0e-06 53.9 83 36.1


User provided reference genes

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