Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.0e-108 395.2 202 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-82 309.3 211 81.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-82 309.3 211 81.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.0e-79 298.1 211 78.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.6e-56 223.4 209 60.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 1.1e-54 217.2 204 62.3
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.3e-54 215.3 208 60.1
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.1e-53 211.1 180 65.6
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.0e-52 208.8 180 65.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.4e-51 205.3 209 55.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.7e-50 203.4 209 58.9
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 6.4e-50 201.4 206 56.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.9e-47 192.2 210 55.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.3e-46 189.1 217 51.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 3.3e-46 189.1 205 53.7
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 5.6e-46 188.3 220 50.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 9.6e-46 187.6 167 64.7
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.6e-45 186.8 209 54.1
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-45 186.8 209 54.1
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-45 186.8 209 54.1
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.6e-45 186.8 217 49.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.1e-45 186.4 209 53.6
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.8e-45 186.0 209 54.1
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.8e-45 186.0 209 56.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-44 183.0 209 52.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.1e-44 182.6 196 52.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.1e-44 182.6 210 50.0
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 4.0e-44 182.2 209 51.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.0e-44 182.2 209 53.1
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.8e-44 181.4 207 52.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 8.9e-44 181.0 196 51.5
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 8.9e-44 181.0 208 55.8
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.5e-43 180.3 208 52.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.5e-43 180.3 206 52.4
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.4e-43 179.1 222 49.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.6e-43 177.9 209 49.3
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 9.9e-43 177.6 208 50.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 4.9e-42 175.3 215 48.8
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-41 173.7 209 49.8
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.9e-41 173.3 209 48.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.2e-41 172.2 208 50.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 7.1e-41 171.4 209 51.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 2.1e-40 169.9 210 49.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.1e-40 169.9 212 48.1
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.1e-40 169.9 213 48.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.6e-40 168.7 210 48.6
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.0e-39 167.5 213 51.2
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.7e-39 166.8 203 50.7
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 3.0e-39 166.0 211 48.3
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 3.0e-39 166.0 218 45.9
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 3.9e-39 165.6 211 48.8
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.1e-38 164.1 209 48.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.9e-38 163.3 221 45.7
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.9e-38 163.3 207 47.8
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.3e-38 162.5 211 49.3
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 5.6e-38 161.8 207 48.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 7.3e-38 161.4 209 47.8
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 7.3e-38 161.4 210 48.1
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.4e-36 156.4 211 46.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.1e-36 156.0 217 45.2
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 4.0e-36 155.6 202 46.5
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 6.9e-36 154.8 203 48.8
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.4e-35 152.1 206 47.6
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.4e-35 152.1 218 45.0
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.2e-34 149.8 194 48.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 2.9e-34 149.4 202 48.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.9e-34 149.4 204 46.1
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.4e-33 147.1 201 49.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 3.2e-33 146.0 217 43.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 5.4e-33 145.2 207 44.0
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-32 144.1 213 42.7
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.1e-32 143.3 220 43.2
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-32 143.3 218 41.7
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.7e-32 142.9 213 42.7
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 7.8e-32 141.4 210 41.9
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.0e-31 141.0 197 47.2
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.7e-31 140.2 218 40.8
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 2.3e-31 139.8 218 40.8
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.0e-31 139.4 210 45.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 3.0e-31 139.4 202 43.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.5e-30 136.3 203 46.3
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 2.5e-30 136.3 207 46.9
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 3.3e-30 136.0 199 42.7
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.3e-30 135.6 206 41.7
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 7.3e-30 134.8 204 41.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-29 133.7 200 44.5
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.6e-29 133.7 200 44.5
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.1e-29 133.3 117 62.4
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 2.1e-29 133.3 130 57.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.1e-29 133.3 127 57.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.6e-29 132.5 118 61.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.1e-28 131.0 208 41.8
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.1e-28 129.4 118 60.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.0e-28 129.0 120 59.2
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 6.9e-28 128.3 142 54.9
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.9e-27 124.4 211 41.7
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.3e-26 124.0 206 39.8
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.8e-26 122.5 211 40.8
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.8e-26 122.5 211 41.7
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 6.4e-26 121.7 196 44.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.4e-26 121.7 118 55.9
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 6.4e-26 121.7 208 40.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 8.4e-26 121.3 215 41.9
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 8.4e-26 121.3 129 50.4
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-25 120.9 157 47.1
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.9e-25 120.2 206 40.3
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-25 120.2 202 40.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.2e-25 119.4 206 38.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.1e-25 118.2 188 42.6
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 9.3e-25 117.9 123 56.9
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 1.2e-24 117.5 112 58.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.6e-24 117.1 120 57.5
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.6e-24 117.1 120 57.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.7e-24 116.3 224 37.1
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.7e-24 116.3 224 37.1
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 3.5e-24 115.9 123 56.1
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.5e-24 115.9 205 40.5
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.6e-24 115.5 205 38.5
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.3e-23 114.0 198 41.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 3.0e-23 112.8 200 36.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.1e-22 110.9 158 45.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.5e-22 110.5 104 53.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.5e-22 109.8 186 41.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.5e-22 109.8 211 39.8
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 9.6e-22 107.8 126 48.4
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 9.6e-22 107.8 202 40.6
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.8e-21 106.3 195 36.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.7e-21 105.9 213 34.7
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.7e-21 105.9 130 44.6
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.7e-21 105.9 130 44.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 6.2e-21 105.1 132 43.9
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-20 103.2 58 86.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.0e-20 102.4 66 74.2
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.8e-19 98.6 122 44.3
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 5.8e-19 98.6 172 36.6
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.0e-18 97.8 193 39.4
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.5e-18 95.1 67 67.2
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.5e-17 93.2 122 47.5
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 5.5e-17 92.0 153 43.8
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.6e-16 90.5 72 63.9
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 7.9e-16 88.2 249 31.7
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.8e-15 87.0 66 65.2
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 3.0e-15 86.3 183 35.5
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.7e-15 84.7 67 62.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.6e-11 73.2 65 55.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.4e-11 72.8 65 55.4
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 7.6e-11 71.6 197 31.5
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.4e-09 67.4 110 36.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.6e-08 62.4 56 51.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.1e-06 57.8 67 43.3


User provided reference genes

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