Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-236 822.8 438 100.0
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.4e-189 665.2 432 81.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-182 642.5 432 80.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.6e-181 639.0 432 78.9
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 9.9e-181 637.1 432 78.7
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.2e-179 632.1 435 82.3
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.7e-178 629.0 432 78.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.0e-178 627.9 431 77.0
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.7e-175 618.2 447 76.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.1e-174 617.1 433 76.9
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.4e-171 606.7 432 75.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.4e-171 605.9 432 73.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.7e-170 602.4 430 73.7
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.3e-169 600.1 433 73.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.1e-169 598.2 431 73.8
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.1e-169 598.2 432 73.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.3e-168 595.5 432 74.3
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 7.3e-168 594.3 432 73.1
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.8e-167 591.7 430 73.3
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-166 590.5 431 72.9
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 4.0e-166 588.6 433 72.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 5.3e-166 588.2 432 72.0
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 6.9e-166 587.8 432 72.5
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.0e-165 586.3 433 71.6
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.2e-164 582.8 432 72.5
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.9e-164 581.6 432 72.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.4e-163 578.2 432 72.0
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.2e-162 577.0 432 71.8
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 2.1e-162 576.2 477 69.2
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.5e-162 575.5 465 69.2
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 3.5e-162 575.5 431 70.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 3.9e-161 572.0 434 72.4
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 5.1e-161 571.6 430 70.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.4e-160 567.8 433 71.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.4e-158 563.5 432 69.0
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.8e-158 563.1 433 70.7
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.1e-158 562.4 430 68.6
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.2e-157 560.5 433 69.1
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.5e-157 560.1 433 71.1
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.6e-157 559.3 432 68.8
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 5.8e-157 558.1 433 68.6
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 5.8e-157 558.1 433 68.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.6e-157 557.8 437 71.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.3e-156 557.0 433 68.6
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.9e-156 555.8 432 69.0
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.9e-156 555.1 432 70.4
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-155 553.1 374 76.5
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 9.3e-155 550.8 432 69.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.7e-154 549.3 434 67.7
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 7.9e-154 547.7 432 68.8
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.9e-154 547.7 431 67.7
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.3e-153 546.2 439 67.9
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.9e-153 545.4 434 67.7
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.5e-152 542.7 433 67.9
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.3e-151 540.4 432 68.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.1e-151 539.7 433 68.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.1e-151 539.7 429 70.4
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.1e-151 539.7 432 68.3
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.8e-151 539.3 433 68.4
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.8e-151 539.3 429 66.9
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.4e-150 537.0 433 67.4
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.8e-150 536.6 433 67.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.0e-150 535.4 433 67.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-149 533.9 434 66.4
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-149 533.9 434 66.4
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-149 533.1 432 66.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 2.6e-149 532.7 432 65.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 2.6e-149 532.7 433 67.4
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 4.5e-149 531.9 432 67.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 5.8e-149 531.6 431 66.8
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.3e-148 530.4 437 66.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.3e-148 530.4 433 66.5
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.7e-148 530.0 434 66.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.7e-148 530.0 414 69.3
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 2.5e-147 526.2 434 66.6
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.2e-147 525.8 436 65.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.2e-147 525.8 434 66.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-147 525.4 516 59.9
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.1e-147 524.6 415 67.5
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.2e-146 523.9 432 66.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.7e-146 522.7 432 69.4
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.7e-146 522.7 434 66.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.7e-146 522.7 433 66.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.6e-146 521.9 434 66.4
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.0e-145 520.8 433 65.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.3e-145 520.4 436 64.9
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.3e-145 520.4 438 64.4
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.3e-145 519.6 430 65.3
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.9e-145 518.8 433 66.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 3.3e-144 515.8 434 65.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 9.7e-144 514.2 430 64.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 9.7e-144 514.2 433 65.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 9.7e-144 514.2 436 64.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-143 513.5 422 68.7
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-142 510.8 436 63.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.1e-142 510.8 431 65.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 5.3e-142 508.4 430 64.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.5e-141 506.9 430 64.0
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 3.4e-141 505.8 433 64.7
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.7e-141 504.6 415 64.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.0e-140 504.2 435 64.1
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.5e-140 501.1 433 64.2
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.9e-139 500.0 433 63.7
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.2e-139 499.2 435 62.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.7e-138 496.1 437 61.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.4e-137 493.8 393 66.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.3e-137 493.0 416 62.7
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 8.8e-137 491.1 415 64.8
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.5e-136 490.3 511 57.5
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 5.7e-136 488.4 439 60.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.4e-134 483.8 432 62.7
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.4e-134 483.0 429 62.2
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.5e-133 478.8 430 61.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.7e-133 478.0 435 62.3
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 7.9e-130 468.0 434 59.2
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.3e-129 466.5 425 61.2
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.7e-129 464.9 410 62.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 9.7e-128 461.1 433 59.6
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 8.2e-127 458.0 431 60.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.3e-126 455.3 315 79.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 8.8e-121 438.0 438 58.9
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.2e-112 411.0 382 63.1
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.2e-107 392.9 432 55.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.1e-106 390.2 433 54.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 8.0e-106 388.3 298 67.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.8e-102 377.1 346 60.4
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.7e-100 370.5 304 65.8
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 6.6e-92 342.0 280 62.9
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 6.1e-90 335.5 408 47.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-88 330.5 428 43.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.5e-80 302.0 201 82.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.4e-78 297.0 180 82.8
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 7.1e-78 295.4 248 65.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.6e-76 288.5 427 46.4
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.1e-75 288.1 325 53.5
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.1e-74 282.0 165 94.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-63 248.1 151 93.4
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.7e-63 247.7 180 71.7
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 5.3e-57 226.1 192 64.6
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.0e-56 224.2 173 64.7
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.6e-52 209.1 172 63.4
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.3e-43 180.3 242 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 3.7e-42 176.8 139 59.7
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.0e-37 159.5 120 72.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.4e-30 138.3 112 67.9
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 8.2e-26 122.5 93 66.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.9e-23 114.0 89 61.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.7e-21 107.5 79 70.9
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 8.8e-20 102.4 113 49.6
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.7e-19 99.8 125 53.6
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.8e-15 87.0 329 28.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.3e-12 77.8 375 24.8
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 5.9e-08 63.2 55 61.8
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.3e-07 62.0 38 76.3


User provided reference genes

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