Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.2e-181 638.3 318 100.0
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.4e-122 442.2 308 76.0
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.4e-120 436.0 309 76.7
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 4.3e-117 425.2 322 73.0
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.8e-115 419.9 312 71.2
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 3.1e-115 419.1 310 71.3
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 6.8e-115 417.9 312 70.8
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 7.6e-114 414.5 310 71.3
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 9.9e-114 414.1 315 70.5
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 9.9e-114 414.1 303 71.6
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 1.1e-112 410.6 307 69.7
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 1.2e-111 407.1 308 69.8
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 2.1e-111 406.4 310 71.3
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 4.6e-111 405.2 300 72.0
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 7.3e-109 397.9 310 66.1
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 9.6e-109 397.5 292 72.3
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.1e-107 394.0 311 67.5
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.1e-107 394.0 309 68.3
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 1.8e-107 393.3 318 65.7
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 3.1e-107 392.5 295 68.8
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 5.2e-107 391.7 350 62.3
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 5.2e-107 391.7 296 68.6
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 9.0e-107 391.0 314 66.6
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.5e-106 390.2 294 70.4
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 5.8e-106 388.3 313 67.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 9.9e-106 387.5 301 66.8
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.3e-105 387.1 278 70.5
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 1.7e-105 386.7 295 69.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.2e-105 386.3 293 68.6
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 3.8e-105 385.6 296 66.2
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 6.4e-105 384.8 302 68.5
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 8.4e-105 384.4 309 64.7
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.9e-104 383.3 320 65.6
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 2.4e-104 382.9 302 67.5
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 2.4e-104 382.9 308 65.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 5.4e-104 381.7 295 66.4
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 7.1e-104 381.3 320 65.3
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 9.3e-104 380.9 304 66.4
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 1.2e-103 380.6 284 69.4
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 2.7e-103 379.4 297 65.7
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 6.0e-103 378.3 306 65.4
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.0e-102 377.5 310 63.9
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 1.3e-102 377.1 304 65.1
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.7e-102 376.7 313 64.5
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 3.0e-102 375.9 309 65.4
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 3.9e-102 375.6 309 65.7
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 3.9e-102 375.6 309 65.0
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.1e-101 374.0 289 65.7
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 1.5e-101 373.6 276 67.8
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 1.5e-101 373.6 278 66.5
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 1.9e-101 373.2 265 70.9
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.9e-101 373.2 289 65.4
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 1.9e-101 373.2 309 65.0
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.9e-101 373.2 292 64.7
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 3.3e-101 372.5 296 65.2
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 4.3e-101 372.1 309 64.4
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 4.8e-100 368.6 310 66.5
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 4.8e-100 368.6 284 65.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 8.1e-100 367.9 278 66.2
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.1e-99 367.5 290 64.1
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.4e-99 367.1 311 62.7
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 2.4e-99 366.3 301 66.4
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 3.1e-99 365.9 310 63.9
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 6.9e-99 364.8 288 61.8
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.9e-99 364.8 293 62.5
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 6.9e-99 364.8 331 61.3
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 1.2e-98 364.0 292 67.5
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 2.6e-98 362.8 303 65.7
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.4e-98 362.5 337 61.1
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 4.5e-98 362.1 305 65.2
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.3e-97 360.5 288 62.2
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 1.3e-97 360.5 287 65.5
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.3e-97 360.5 291 68.0
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.4e-96 356.3 337 59.9
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 3.2e-96 355.9 307 64.5
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 4.2e-96 355.5 314 63.7
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 2.1e-95 353.2 300 64.3
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 4.6e-95 352.1 297 65.0
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 7.9e-95 351.3 297 65.7
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.3e-94 349.7 317 59.0
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 3.9e-94 349.0 305 60.3
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 4.3e-93 345.5 278 61.5
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.3e-92 344.0 278 65.5
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.8e-92 342.8 345 57.1
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 2.4e-91 339.7 295 59.3
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.2e-90 337.4 247 72.1
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.1e-87 326.6 295 60.7
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 1.1e-85 320.9 311 59.8
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.5e-85 320.5 300 61.0
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.3e-85 319.3 320 56.9
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 4.3e-85 318.9 324 55.9
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.7e-84 315.8 306 58.2
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 3.7e-84 315.8 299 60.5
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 4.0e-83 312.4 301 60.1
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 3.9e-78 295.8 318 53.8
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 4.8e-76 288.9 233 62.2
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 4.8e-76 288.9 308 51.3
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.4e-70 270.8 185 75.7
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.5e-69 266.5 217 61.8
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.9e-67 258.5 200 64.5
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.2e-63 247.7 204 64.2
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 5.7e-61 238.8 184 70.1
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.1e-59 233.0 144 76.4
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 3.1e-59 233.0 294 45.9
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 1.2e-58 231.1 189 66.1
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 2.9e-57 226.5 307 45.6
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 1.5e-53 214.2 243 49.4
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.4e-51 206.8 167 67.7
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 6.5e-49 198.7 130 77.7
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.1e-48 198.0 314 36.9
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 4.7e-47 192.6 298 39.6
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.8e-46 190.7 163 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 6.7e-46 188.7 283 37.5
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 6.7e-46 188.7 160 68.8
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.5e-45 185.3 175 58.9
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 9.7e-45 184.9 225 51.1
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 3.1e-43 179.9 297 39.7
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.2e-42 177.9 158 65.2
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.0e-37 160.6 105 75.2
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 2.6e-37 160.2 105 75.2
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.1e-35 154.8 139 65.5
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 2.0e-29 134.0 89 70.8
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 5.6e-24 115.9 123 60.2
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 5.2e-22 109.4 87 66.7
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 7.5e-21 105.5 259 34.4
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 4.9e-20 102.8 104 60.6
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 1.4e-19 101.3 113 58.4
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 4.1e-19 99.8 82 64.6
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 1.1e-16 91.7 246 32.5
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.9e-16 90.9 133 43.6
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 9.5e-16 88.6 110 51.8
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 2.7e-10 70.5 99 45.5
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 2.5e-08 63.9 170 27.6


User provided reference genes

Program Settings