Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1780.8 906 100.0
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1767.7 929 97.5
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1729.9 965 92.7
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1366.7 963 74.2
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1194.1 967 64.7
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1122.5 967 62.3
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1121.7 967 61.7
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1120.1 967 61.5
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1113.2 966 62.4
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1109.4 967 61.4
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1095.9 967 61.7
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1089.7 1011 59.5
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1088.9 967 60.3
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1080.5 968 61.2
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1076.2 966 61.0
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 6.2e-312 1073.9 968 60.6
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 3.6e-310 1068.1 970 60.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 1.4e-309 1066.2 968 60.2
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 1.3e-307 1059.7 965 59.8
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 1.8e-306 1055.8 985 58.8
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 2.9e-304 1048.5 967 59.4
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 5.2e-301 1037.7 965 58.8
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.3e-299 1033.1 958 59.7
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 2.2e-299 1032.3 965 59.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.9e-299 1031.2 1025 55.5
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 1.2e-294 1016.5 968 58.1
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 7.0e-290 1000.7 970 56.4
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 5.6e-287 991.1 1027 54.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 4.0e-285 984.9 968 56.5
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 3.4e-284 981.9 999 55.5
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 7.5e-284 980.7 981 55.0
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 8.3e-283 977.2 968 56.5
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 8.3e-283 977.2 967 55.7
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 1.1e-282 976.9 967 55.9
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 5.6e-279 964.5 1010 54.9
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 8.9e-277 957.2 968 54.6
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 2.0e-276 956.1 973 54.6
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 1.7e-275 953.0 970 55.1
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 5.4e-274 948.0 975 55.4
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 2.3e-272 942.6 967 54.5
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 6.6e-272 941.0 968 54.6
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 9.9e-268 927.2 966 53.7
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 1.3e-264 916.8 967 54.0
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 9.6e-263 910.6 973 53.5
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 1.8e-261 906.4 970 52.4
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 1.3e-259 900.2 975 51.4
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 4.8e-254 881.7 1016 50.2
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 1.1e-253 880.6 968 52.2
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 3.2e-250 869.0 974 52.1
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 1.2e-249 867.1 970 52.0
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 2.1e-249 866.3 968 51.8
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 6.0e-249 864.8 970 52.1
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 1.0e-248 864.0 972 51.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 1.8e-248 863.2 969 51.8
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 2.1e-246 856.3 984 50.9
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 4.8e-246 855.1 970 52.4
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 3.4e-244 849.0 955 50.8
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 7.4e-231 804.7 973 47.7
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 6.1e-209 731.9 986 43.9
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 5.7e-207 725.3 497 76.5
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 6.5e-203 711.8 933 47.9
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 9.8e-199 698.0 823 49.5
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.7e-172 610.1 681 51.8
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 8.4e-158 562.0 999 36.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 1.4e-152 544.7 989 34.7
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.0e-139 501.9 313 82.7
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.3e-137 495.0 390 70.3
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 8.7e-131 472.2 963 33.0
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.5e-127 461.5 420 56.9
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.4e-112 411.8 304 69.7
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 4.2e-101 373.6 725 33.1
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.1e-85 322.4 503 39.8
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 4.2e-85 320.5 506 42.7
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.2e-85 319.7 255 64.3
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.6e-52 212.2 276 46.7
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.4e-41 173.7 137 64.2
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 5.4e-40 170.6 191 50.3
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 3.9e-38 164.5 195 44.1
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 2.2e-33 148.7 115 65.2
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 4.8e-20 104.4 136 47.8
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 4.5e-18 97.8 134 48.5
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 2.9e-17 95.1 69 68.1
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 3.8e-17 94.7 225 32.9
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 4.9e-17 94.4 100 50.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.3e-14 86.3 120 37.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.6e-10 70.5 70 52.9
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.0e-09 70.1 168 35.1
Zm00001eb019760 Zea mays HOM05D007170 ORTHO05D009243 1.6e-07 62.8 85 38.8


User provided reference genes

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