Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002259 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 4.7e-49 197.6 103 100.0
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 2.9e-38 161.8 134 70.1
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 8.1e-33 143.7 127 65.4
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 4.0e-32 141.4 134 61.2
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 4.0e-32 141.4 126 65.1
Dinv16312 Davidia involucrata HOM05D003605 ORTHO05D004292 6.8e-32 140.6 133 60.2
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 1.2e-31 139.8 134 59.7
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 1.5e-31 139.4 127 63.0
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.0e-31 139.0 134 59.0
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 7.5e-31 137.1 127 63.0
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 7.5e-31 137.1 128 60.2
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 1.3e-30 136.3 127 62.2
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.7e-30 136.0 127 61.4
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.7e-30 136.0 127 61.4
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 3.7e-30 134.8 134 57.5
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 3.7e-30 134.8 128 60.9
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 3.7e-30 134.8 128 59.4
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 4.9e-30 134.4 134 58.2
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 4.9e-30 134.4 133 59.4
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 8.3e-30 133.7 127 60.6
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 8.3e-30 133.7 131 58.0
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 8.3e-30 133.7 129 61.2
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 1.1e-29 133.3 134 58.2
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 1.1e-29 133.3 133 57.9
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.1e-29 133.3 128 59.4
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.1e-29 133.3 134 57.5
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 1.1e-29 133.3 128 58.6
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 1.4e-29 132.9 134 59.0
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 1.4e-29 132.9 121 63.6
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 1.4e-29 132.9 129 60.5
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 1.9e-29 132.5 128 59.4
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 1.9e-29 132.5 134 58.2
Gohir.A13G028200 Gossypium hirsutum HOM05D003605 ORTHO05D004292 2.4e-29 132.1 127 60.6
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 2.4e-29 132.1 120 63.3
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 3.2e-29 131.7 121 62.0
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 3.2e-29 131.7 134 56.0
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 4.1e-29 131.3 134 56.7
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 5.4e-29 131.0 134 56.0
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 5.4e-29 131.0 128 58.6
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 7.1e-29 130.6 134 56.0
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 7.1e-29 130.6 128 58.6
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 7.1e-29 130.6 134 56.7
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 9.2e-29 130.2 128 58.6
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 9.2e-29 130.2 135 59.3
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 9.2e-29 130.2 135 59.3
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 9.2e-29 130.2 135 59.3
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 9.2e-29 130.2 133 57.1
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 9.2e-29 130.2 131 56.5
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 9.2e-29 130.2 126 60.3
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 1.2e-28 129.8 130 60.8
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 1.2e-28 129.8 136 56.6
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 1.2e-28 129.8 134 54.5
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 1.2e-28 129.8 133 57.9
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 1.2e-28 129.8 126 57.9
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.2e-28 129.8 127 59.1
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.2e-28 129.8 127 59.1
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 1.6e-28 129.4 131 58.8
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 1.6e-28 129.4 136 53.7
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.6e-28 129.4 129 58.1
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 1.6e-28 129.4 128 57.8
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 1.6e-28 129.4 134 57.5
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 2.1e-28 129.0 121 62.8
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 2.1e-28 129.0 133 55.6
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 3.5e-28 128.3 130 60.0
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 3.5e-28 128.3 127 59.1
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.5e-28 128.3 129 58.9
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.5e-28 128.3 121 62.0
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 3.5e-28 128.3 134 55.2
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 3.5e-28 128.3 132 57.6
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 6.0e-28 127.5 134 56.7
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 7.8e-28 127.1 132 56.8
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 7.8e-28 127.1 132 55.3
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 7.8e-28 127.1 121 61.2
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 7.8e-28 127.1 121 61.2
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 7.8e-28 127.1 134 54.5
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 7.8e-28 127.1 129 55.8
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 1.0e-27 126.7 132 55.3
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 1.0e-27 126.7 118 60.2
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 1.0e-27 126.7 134 54.5
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 1.3e-27 126.3 133 56.4
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 1.7e-27 125.9 123 60.2
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 1.7e-27 125.9 123 58.5
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 1.7e-27 125.9 123 58.5
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 3.0e-27 125.2 123 58.5
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 3.9e-27 124.8 120 60.8
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 8.6e-27 123.6 121 58.7
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 8.6e-27 123.6 128 56.2
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 1.5e-26 122.9 126 56.3
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.9e-26 122.5 134 52.2
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 1.9e-26 122.5 120 60.0
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.9e-26 122.5 123 56.9
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 3.3e-26 121.7 121 59.5
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 4.3e-26 121.3 128 56.2
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 4.3e-26 121.3 128 56.2
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 5.6e-26 120.9 121 59.5
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 7.3e-26 120.6 120 58.3
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 7.3e-26 120.6 96 68.8
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 7.3e-26 120.6 129 54.3
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 7.3e-26 120.6 134 50.7
Oeu051794.2 Olea europaea HOM05D003605 ORTHO05D004292 1.6e-25 119.4 96 68.8
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 1.6e-25 119.4 122 58.2
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 2.1e-25 119.0 119 58.0
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 2.1e-25 119.0 121 56.2
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.1e-25 119.0 119 57.1
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 2.8e-25 118.6 119 57.1
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 8.1e-25 117.1 119 56.3
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 8.1e-25 117.1 128 52.3
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 1.1e-24 116.7 119 56.3
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.1e-24 116.7 121 54.5
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.1e-24 116.7 160 50.0
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 1.4e-24 116.3 127 53.5
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 1.4e-24 116.3 123 54.5
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 1.8e-24 115.9 123 54.5
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 1.8e-24 115.9 119 54.6
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 2.4e-24 115.5 119 56.3
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 2.4e-24 115.5 126 54.0
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 2.4e-24 115.5 130 52.3
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 3.1e-24 115.2 118 55.9
SEGI_19936 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 4.0e-24 114.8 119 53.8
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 8.9e-24 113.6 122 55.7
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 1.2e-23 113.2 126 54.0
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 1.2e-23 113.2 98 60.2
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 1.2e-23 113.2 119 54.6
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.5e-23 112.8 121 52.9
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 1.5e-23 112.8 119 56.3
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 2.6e-23 112.1 132 50.0
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 3.4e-23 111.7 126 53.2
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 1.3e-22 109.8 121 52.1
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 2.2e-22 109.0 119 52.9
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 2.9e-22 108.6 126 52.4
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 6.4e-22 107.5 130 51.5
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 6.4e-22 107.5 119 52.9
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 8.4e-22 107.1 118 54.2
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 8.4e-22 107.1 121 52.9
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 3.2e-21 105.1 121 52.9
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 2.7e-20 102.1 98 58.2
Lalb_Chr13g0296071 Lupinus albus HOM05D003605 ORTHO05D004292 3.5e-20 101.7 117 52.1
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 1.9e-18 95.9 119 49.6
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 2.5e-18 95.5 119 44.5
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 3.3e-18 95.1 121 45.5
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 2.8e-17 92.0 115 51.3
MCO16G531 Micromonas commoda HOM05D003605 ORTHO05D004292 5.3e-16 87.8 120 41.7
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 5.3e-16 87.8 122 48.4
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 3.4e-15 85.1 107 51.4
GSVIVG01015252001 Vitis vinifera HOM05D003605 ORTHO05D004292 1.1e-13 80.1 97 52.6
CAN.G827.3 Capsicum annuum HOM05D003605 ORTHO05D004292 1.6e-12 76.3 77 54.5
PRCOL_00005023 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 7.8e-12 73.9 96 43.8
arahy.Tifrunner.gnm1.ann1.21PEZK Arachis hypogaea HOM05D003605 ORTHO05D004292 1.4e-08 63.2 70 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2348 Anthoceros agrestis HOM05D003605 ORTHO05D004292 4.0e-08 61.6 71 49.3
HanXRQChr09g0260221 Helianthus annuus HOM05D024719 ORTHO05D004292 9.0e-08 60.5 72 52.8
Haze_27183 Corylus avellana HOM05D003605 ORTHO05D004292 1.7e-06 56.2 116 30.2


User provided reference genes

Program Settings