Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.7e-146 521.2 263 100.0
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.4e-137 493.0 254 99.2
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.2e-125 453.4 255 90.6
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.6e-125 451.4 252 91.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-123 446.8 255 89.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.5e-123 445.7 255 89.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 5.6e-123 444.5 255 89.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.6e-123 443.7 255 88.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.6e-122 443.0 255 88.6
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.1e-122 442.6 255 87.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.1e-121 440.3 255 87.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.4e-121 439.9 255 86.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.8e-121 439.5 250 88.8
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 9.0e-121 437.2 254 87.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.0e-120 436.0 251 87.3
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.0e-120 436.0 255 87.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.6e-120 435.6 254 86.6
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 7.6e-120 434.1 255 87.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 7.6e-120 434.1 254 87.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 7.6e-120 434.1 254 85.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.6e-120 434.1 255 87.5
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.0e-119 433.7 256 87.9
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.0e-119 433.7 251 86.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.0e-119 433.7 252 86.5
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.3e-119 433.3 252 86.5
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.7e-119 433.0 255 87.1
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.7e-119 433.0 255 87.1
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.2e-119 432.6 256 86.7
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.9e-119 432.2 254 87.0
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 4.9e-119 431.4 255 87.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-118 430.3 255 85.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.9e-118 429.5 255 85.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.5e-118 429.1 255 85.5
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.5e-118 429.1 254 87.4
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.2e-118 428.3 252 85.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.1e-118 427.6 254 85.8
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.1e-117 426.0 255 84.7
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.7e-117 425.6 252 84.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.6e-117 424.9 255 85.5
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.9e-117 424.1 255 84.3
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-116 423.7 255 85.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.0e-116 423.7 250 84.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.3e-116 423.3 255 84.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.8e-116 422.9 252 86.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.0e-116 422.2 255 84.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.0e-116 422.2 255 85.5
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.9e-116 421.8 251 84.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.7e-116 421.0 251 84.5
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.7e-116 421.0 250 84.0
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.5e-115 419.9 254 85.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.5e-115 419.1 255 85.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.5e-115 419.1 250 85.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.5e-115 419.1 254 84.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 3.3e-115 418.7 250 85.6
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.3e-115 418.7 249 85.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.3e-115 418.3 251 86.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.3e-115 418.3 259 82.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 5.7e-115 417.9 250 83.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 9.6e-115 417.2 252 84.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 9.6e-115 417.2 262 84.4
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.3e-114 416.8 248 84.3
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.6e-114 416.4 255 84.3
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-114 416.4 250 84.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.8e-114 415.6 252 82.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.8e-114 415.6 254 83.9
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.7e-114 415.2 256 84.8
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.3e-114 414.5 257 82.1
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 8.2e-114 414.1 262 82.8
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.4e-113 413.3 248 81.9
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.4e-113 413.3 255 84.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.4e-113 412.5 254 83.1
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 6.9e-113 411.0 254 84.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 6.9e-113 411.0 252 83.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.4e-112 408.7 256 84.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.4e-112 408.7 252 84.1
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 5.9e-112 407.9 255 83.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.9e-112 407.9 255 82.0
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 254 81.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 254 81.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.9e-111 405.6 249 82.3
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.9e-111 405.6 250 82.0
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 5.0e-111 404.8 275 77.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.5e-111 404.1 249 83.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.9e-110 402.9 249 82.7
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.9e-110 402.9 254 80.3
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 9.3e-110 400.6 249 81.5
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.1e-109 399.4 283 76.0
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.0e-108 397.1 249 82.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.3e-108 396.0 251 80.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-107 393.7 252 80.6
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-107 393.3 253 79.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.4e-107 391.0 249 79.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 9.7e-107 390.6 252 79.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.6e-106 389.8 249 79.5
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-106 388.3 296 71.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 6.3e-106 387.9 254 79.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 8.2e-106 387.5 307 70.4
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 4.1e-105 385.2 254 78.3
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 5.3e-105 384.8 256 78.9
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 9.1e-105 384.0 254 78.3
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 3.4e-104 382.1 267 76.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 7.7e-104 380.9 257 77.8
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.9e-103 379.0 226 84.5
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 6.5e-103 377.9 252 78.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-102 376.7 251 78.1
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.2e-102 374.4 257 74.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.2e-102 374.4 257 74.7
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.6e-101 371.7 245 79.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.6e-99 365.9 225 82.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.6e-99 365.9 258 74.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.8e-98 361.7 256 74.2
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.8e-97 359.8 235 77.9
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.9e-97 357.8 251 73.3
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.2e-96 357.1 255 72.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.5e-96 356.7 263 74.1
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.0e-96 356.3 252 73.4
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.4e-96 355.5 257 73.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 251 75.3
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.5e-95 350.9 249 71.9
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.2e-94 349.0 249 71.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.2e-94 348.6 249 71.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 7.2e-94 347.8 257 72.4
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.7e-93 345.1 249 71.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.7e-93 345.1 249 71.5
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.7e-93 345.1 249 71.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 6.1e-93 344.7 249 71.9
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 6.1e-93 344.7 249 71.9
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 7.9e-93 344.4 254 72.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.9e-92 342.0 249 71.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 5.2e-92 341.7 250 71.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 5.2e-92 341.7 250 71.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.8e-92 340.9 256 71.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 8.8e-92 340.9 249 70.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.1e-91 340.5 251 70.9
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.2e-90 336.3 268 67.5
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.7e-90 335.5 249 72.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.8e-90 335.1 249 70.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.0e-89 331.3 255 70.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.6e-88 329.3 199 84.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.5e-88 328.9 206 83.5
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 5.5e-86 321.6 197 82.7
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.0e-84 317.4 250 68.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.1e-81 305.8 240 68.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.3e-81 305.1 255 64.3
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.3e-81 305.1 249 63.9
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.8e-79 298.9 249 63.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 7.2e-78 294.7 255 62.4
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.6e-77 292.4 249 63.1
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.5e-75 287.0 249 61.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.5e-75 284.6 189 78.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.2e-70 269.2 144 92.4
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.4e-65 253.1 162 79.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.0e-43 180.3 212 50.9
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 6.6e-39 165.2 105 78.1
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.1e-38 164.5 148 58.8
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.2e-37 158.7 236 42.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 8.1e-37 158.3 262 38.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.5e-35 154.1 111 75.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.0e-31 139.8 93 76.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.6e-31 138.7 74 95.9
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-26 124.4 89 73.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-25 119.0 226 39.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.4e-19 99.8 157 40.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.7e-16 90.1 117 41.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.3e-15 87.0 50 80.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.8e-13 79.3 64 65.6
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.8e-12 77.4 41 82.9
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 3.1e-12 76.6 41 80.5
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.8e-11 72.4 113 46.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.9e-10 70.1 43 69.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.6e-08 64.3 138 34.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 6.7e-07 58.9 86 34.9


User provided reference genes

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