Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.1e-34 147.1 72 100.0
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.1e-34 147.1 72 100.0
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 3.4e-22 107.8 72 73.6
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 2.1e-19 98.6 63 71.4
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 4.6e-19 97.4 65 69.2
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 7.9e-19 96.7 73 65.8
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 7.9e-19 96.7 69 66.7
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.0e-18 96.3 63 69.8
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.9e-18 94.4 65 67.7
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 3.3e-17 91.3 65 64.6
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 7.4e-17 90.1 65 64.6
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 1.6e-16 89.0 72 61.1
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 1.1e-15 86.3 72 59.7
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.1e-15 86.3 71 60.6
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 1.4e-15 85.9 69 56.5
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.8e-15 85.5 71 60.6
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 5.3e-15 84.0 65 63.1
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 1.5e-14 82.4 69 55.1
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 4.5e-14 80.9 56 66.1
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 4.5e-14 80.9 68 51.5
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 5.9e-14 80.5 70 50.0
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 7.7e-14 80.1 68 51.5
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 7.7e-14 80.1 68 51.5
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 2.2e-13 78.6 68 50.0
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 3.8e-13 77.8 68 54.4
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 3.8e-13 77.8 68 51.5
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 6.5e-13 77.0 61 60.7
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 6.5e-13 77.0 68 52.9
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 6.5e-13 77.0 65 53.8
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 1.9e-12 75.5 66 53.0
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 2.5e-12 75.1 54 61.1
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 4.2e-12 74.3 68 50.0
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 7.2e-12 73.6 54 63.0
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 9.4e-12 73.2 68 51.5
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 2.7e-11 71.6 69 50.7
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 2.7e-11 71.6 61 50.8
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 4.6e-11 70.9 54 57.4
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 4.6e-11 70.9 54 57.4
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 4.6e-11 70.9 67 49.3
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 4.6e-11 70.9 69 50.7
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 7.9e-11 70.1 54 57.4
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 1.8e-10 68.9 61 54.1
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 3.0e-10 68.2 65 49.2
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 3.0e-10 68.2 65 46.2
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 3.0e-10 68.2 65 46.2
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 3.9e-10 67.8 65 46.2
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 5.1e-10 67.4 67 47.8
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 6.7e-10 67.0 65 44.6
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 8.8e-10 66.6 67 46.3
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 8.8e-10 66.6 54 51.9
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 1.1e-09 66.2 55 52.7
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 1.5e-09 65.9 67 47.8
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 1.5e-09 65.9 61 52.5
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 1.5e-09 65.9 64 50.0
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 2.0e-09 65.5 61 50.8
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 2.5e-09 65.1 61 50.8
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 2.5e-09 65.1 65 43.1
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 2.5e-09 65.1 65 43.1
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 2.5e-09 65.1 67 44.8
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 3.3e-09 64.7 64 54.7
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 4.3e-09 64.3 67 46.3
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 4.3e-09 64.3 68 47.1
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 4.3e-09 64.3 64 48.4
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 5.7e-09 63.9 66 50.0
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 5.7e-09 63.9 67 46.3
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.7e-09 63.9 67 46.3
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.7e-09 63.9 67 46.3
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 7.4e-09 63.5 67 44.8
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 7.4e-09 63.5 67 46.3
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.8e-08 61.6 67 44.8
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 4.8e-08 60.8 64 46.9
Oeu035188.1 Olea europaea HOM05D007796 ORTHO05D009853 4.8e-08 60.8 48 54.2
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 4.8e-08 60.8 70 45.7
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 6.3e-08 60.5 61 45.9
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 6.3e-08 60.5 54 50.0
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 1.8e-07 58.9 54 51.9
Cc03_g12300 Coffea canephora HOM05D007796 ORTHO05D009853 4.1e-07 57.8 68 42.6
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 5.3e-07 57.4 63 44.4
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 1.5e-06 55.8 69 44.9
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 1.5e-06 55.8 65 43.1
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 2.0e-06 55.5 56 48.2
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 4.5e-06 54.3 66 45.5
AUR62002357 Chenopodium quinoa HOM05D007796 ORTHO05D009853 4.5e-06 54.3 56 50.0
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 5.9e-06 53.9 75 40.0
Phvul.010G110050 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 5.9e-06 53.9 54 48.1
Phvul.010G110100 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 7.7e-06 53.5 54 48.1


User provided reference genes

Program Settings