Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.1e-69 265.0 175 100.0
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 3.6e-49 198.7 188 76.1
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.0e-48 195.3 182 73.1
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.8e-48 194.1 186 64.5
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.4e-47 192.2 180 76.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-46 190.3 182 70.9
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.3e-46 190.3 176 63.6
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.3e-46 187.6 179 70.4
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.1e-45 187.2 176 70.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.1e-45 187.2 150 79.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 5.4e-45 184.9 195 70.3
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 5.4e-45 184.9 150 71.3
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 7.0e-45 184.5 145 78.6
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.1e-45 184.1 182 72.0
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 9.1e-45 184.1 175 74.3
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 9.1e-45 184.1 176 60.2
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.2e-44 183.7 180 71.7
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.6e-44 183.3 139 79.9
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.6e-44 183.3 176 60.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.0e-44 183.0 180 70.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.7e-44 182.6 138 76.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.5e-44 182.2 150 76.7
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.5e-44 181.8 180 72.8
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.9e-44 181.4 190 72.6
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.7e-44 181.0 190 73.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 7.7e-44 181.0 175 72.0
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 7.7e-44 181.0 187 66.8
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.3e-43 180.3 176 69.9
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.3e-43 180.3 188 59.6
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.7e-43 179.9 178 67.4
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.9e-43 179.1 147 77.6
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 5.0e-43 178.3 147 75.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 6.6e-43 177.9 148 67.6
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.6e-43 177.9 148 75.7
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.6e-43 177.9 134 81.3
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-42 177.2 175 71.4
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.1e-42 177.2 151 69.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.5e-42 176.8 186 57.5
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.5e-42 176.8 148 75.7
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.9e-42 176.4 183 60.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.9e-42 176.4 145 65.5
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.9e-42 176.4 143 76.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.9e-42 176.4 191 70.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.5e-42 176.0 179 59.2
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.5e-42 176.0 149 71.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.3e-42 175.6 180 62.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.2e-42 175.3 153 75.2
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 4.2e-42 175.3 133 81.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 4.2e-42 175.3 179 69.3
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 5.6e-42 174.9 147 72.8
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.6e-42 174.9 149 75.2
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.6e-42 174.9 148 74.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 5.6e-42 174.9 179 64.2
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.2e-41 173.7 147 72.8
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.2e-41 173.7 176 68.2
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.6e-41 173.3 183 70.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.6e-41 173.3 189 72.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.1e-41 172.9 133 78.2
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.1e-41 172.9 189 59.8
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.8e-41 172.6 182 67.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.8e-41 172.6 180 58.9
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 2.8e-41 172.6 141 73.0
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.6e-41 172.2 143 77.6
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.6e-41 172.2 145 72.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 4.7e-41 171.8 139 79.1
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.7e-41 171.8 178 72.5
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 4.7e-41 171.8 152 71.7
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 4.7e-41 171.8 190 73.2
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 4.7e-41 171.8 183 66.1
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 6.1e-41 171.4 143 77.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 6.1e-41 171.4 150 75.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 6.1e-41 171.4 139 73.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 6.1e-41 171.4 150 75.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 6.1e-41 171.4 138 76.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 6.1e-41 171.4 190 65.3
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 8.0e-41 171.0 139 78.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 8.0e-41 171.0 139 77.7
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 8.0e-41 171.0 143 74.1
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.0e-40 170.6 187 67.9
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.4e-40 170.2 139 72.7
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.4e-40 170.2 186 57.5
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.4e-40 170.2 187 71.7
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.3e-40 169.5 140 71.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 4.0e-40 168.7 147 71.4
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 5.2e-40 168.3 172 66.3
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.8e-40 167.9 143 72.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 8.9e-40 167.5 133 73.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 8.9e-40 167.5 190 68.9
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 8.9e-40 167.5 182 61.0
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.2e-39 167.2 150 72.0
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.2e-39 167.2 191 71.7
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.2e-39 167.2 192 65.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.0e-39 166.4 151 70.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.6e-39 166.0 185 68.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.6e-39 166.0 191 55.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 4.4e-39 165.2 151 69.5
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.4e-39 165.2 151 70.2
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 4.4e-39 165.2 179 58.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.8e-39 164.1 148 70.3
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.8e-39 164.1 148 70.3
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.2e-38 162.9 156 66.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.2e-38 162.9 144 68.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.9e-38 162.5 136 77.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.9e-38 162.5 136 70.6
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 6.4e-38 161.4 148 63.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 8.3e-38 161.0 177 65.0
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.1e-37 160.6 138 71.7
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.1e-37 160.6 137 61.3
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.1e-37 160.6 144 68.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-37 160.2 188 58.0
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-37 160.2 189 65.1
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.8e-37 159.8 180 61.7
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 3.2e-37 159.1 148 70.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.6e-36 156.8 85 89.4
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.6e-36 156.8 84 90.5
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.5e-36 155.6 148 62.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.6e-36 155.2 88 87.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 2.3e-35 152.9 182 58.2
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.1e-34 150.6 173 59.5
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.9e-34 149.8 118 78.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.5e-34 149.4 159 64.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 9.5e-34 147.5 137 59.1
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.8e-32 143.3 172 67.4
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.8e-32 143.3 163 50.3
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.3e-30 137.1 75 88.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.2e-30 136.3 70 92.9
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 6.6e-27 124.8 69 79.7
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-24 116.7 146 74.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.5e-23 113.6 108 56.5
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 3.4e-23 112.5 142 59.2
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.4e-23 112.5 84 63.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 9.8e-23 110.9 103 59.2
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 4.9e-22 108.6 71 77.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.2e-21 105.9 137 73.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 5.4e-21 105.1 85 57.6
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.3e-19 100.5 80 58.8
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 5.1e-19 98.6 155 56.8
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 6.6e-19 98.2 112 69.6
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.5e-18 97.1 80 55.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 5.6e-18 95.1 82 56.1
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 4.0e-16 89.0 134 55.2
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.7e-12 76.3 139 51.8
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 8.6e-11 71.2 67 55.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.6e-07 59.7 39 61.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 6.4e-06 55.1 110 46.4


User provided reference genes

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