Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 3.3e-68 261.5 127 100.0
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.2e-57 226.5 127 83.5
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.6e-54 216.1 124 79.0
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.6e-54 216.1 124 79.0
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.6e-54 216.1 123 82.9
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 4.6e-54 214.5 127 79.5
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 6.6e-53 210.7 125 78.4
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 6.6e-53 210.7 127 78.0
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.5e-52 209.5 127 75.6
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 9.6e-52 206.8 127 74.8
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 1.2e-51 206.5 127 75.6
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 1.2e-51 206.5 127 75.6
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.2e-51 206.5 126 75.4
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.2e-51 206.5 126 75.4
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 1.6e-51 206.1 126 73.0
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.6e-51 206.1 127 73.2
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.8e-51 205.3 126 74.6
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.8e-51 205.3 127 74.8
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 3.6e-51 204.9 127 74.0
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.6e-51 204.9 122 77.0
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 8.1e-51 203.8 126 73.8
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 1.8e-50 202.6 127 74.0
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 1.8e-50 202.6 126 73.0
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 1.8e-50 202.6 122 74.6
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 2.4e-50 202.2 125 77.6
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 2.4e-50 202.2 127 74.8
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 2.4e-50 202.2 127 72.4
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 1.5e-49 199.5 127 72.4
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.5e-49 199.5 124 71.8
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 4.4e-49 198.0 125 72.0
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 4.4e-49 198.0 126 71.4
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 7.6e-49 197.2 126 70.6
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 9.9e-49 196.8 125 71.2
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 9.9e-49 196.8 126 70.6
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 9.9e-49 196.8 128 71.1
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.7e-48 196.1 127 69.3
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 1.7e-48 196.1 121 75.2
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 3.8e-48 194.9 120 74.2
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 4.9e-48 194.5 127 71.7
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 6.4e-48 194.1 125 71.2
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 6.4e-48 194.1 123 74.0
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 8.4e-48 193.7 127 69.3
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 1.1e-47 193.4 125 72.8
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 1.9e-47 192.6 125 72.0
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 1.9e-47 192.6 125 72.0
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 2.4e-47 192.2 123 73.2
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 4.2e-47 191.4 127 68.5
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.2e-47 191.4 127 69.3
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 7.1e-47 190.7 127 69.3
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 9.3e-47 190.3 125 69.6
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 1.2e-46 189.9 125 64.8
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 1.2e-46 189.9 128 68.8
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 1.2e-46 189.9 124 71.8
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 1.2e-46 189.9 124 68.5
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 1.2e-46 189.9 128 69.5
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.2e-46 189.9 124 67.7
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 2.1e-46 189.1 125 68.0
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 2.1e-46 189.1 125 70.4
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 2.1e-46 189.1 124 68.5
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 3.5e-46 188.3 128 68.8
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 6.0e-46 187.6 124 70.2
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 7.8e-46 187.2 122 69.7
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 1.0e-45 186.8 127 70.1
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 1.0e-45 186.8 123 70.7
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 3.0e-45 185.3 127 68.5
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 3.0e-45 185.3 128 69.5
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 3.9e-45 184.9 124 67.7
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 5.1e-45 184.5 126 67.5
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 5.1e-45 184.5 125 68.0
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 5.1e-45 184.5 125 68.0
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 5.1e-45 184.5 103 82.5
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 6.6e-45 184.1 125 67.2
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 6.6e-45 184.1 125 67.2
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 8.7e-45 183.7 124 68.5
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 1.1e-44 183.3 129 65.1
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.1e-44 183.3 124 67.7
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 1.5e-44 183.0 125 67.2
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 1.9e-44 182.6 127 66.9
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 1.9e-44 182.6 125 68.8
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 1.9e-44 182.6 123 69.1
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 2.5e-44 182.2 122 66.4
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 3.3e-44 181.8 126 67.5
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 3.3e-44 181.8 126 68.3
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 4.3e-44 181.4 124 69.4
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 4.3e-44 181.4 121 69.4
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 4.3e-44 181.4 124 67.7
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 4.3e-44 181.4 125 71.2
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 4.3e-44 181.4 122 70.5
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 5.6e-44 181.0 125 69.6
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 1.3e-43 179.9 127 69.3
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 2.1e-43 179.1 122 68.0
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 2.1e-43 179.1 126 65.9
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.6e-43 178.3 127 66.9
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 8.1e-43 177.2 122 68.9
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 1.4e-42 176.4 125 64.8
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 1.4e-42 176.4 125 64.8
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 1.4e-42 176.4 127 63.8
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 3.1e-42 175.3 127 66.1
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 4.0e-42 174.9 127 63.0
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 4.0e-42 174.9 130 65.4
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 5.3e-42 174.5 128 66.4
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 1.5e-41 172.9 124 63.7
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 2.0e-41 172.6 126 65.1
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.0e-41 172.6 127 66.1
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 5.8e-41 171.0 126 65.1
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 2.2e-40 169.1 129 61.2
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 4.9e-40 167.9 126 62.7
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.4e-39 165.6 126 63.5
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 5.1e-37 157.9 124 57.3
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 1.5e-36 156.4 126 58.7
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 1.9e-36 156.0 127 59.8
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.5e-36 155.6 127 60.6
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 7.6e-33 144.1 80 81.2
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 4.2e-31 138.3 95 65.3
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 2.7e-30 135.6 127 54.3
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 6.0e-30 134.4 81 72.8
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 3.9e-29 131.7 96 65.6
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 1.5e-28 129.8 127 52.8
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.1e-27 125.9 77 71.4
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 4.5e-25 118.2 67 80.6
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 4.5e-25 118.2 127 50.4
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 6.5e-24 114.4 127 49.6
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 4.2e-23 111.7 117 52.1
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 2.2e-19 99.4 135 43.0
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 6.3e-19 97.8 66 65.2
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 8.2e-19 97.4 70 64.3
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 8.2e-19 97.4 76 61.8
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 7.6e-17 90.9 72 59.7
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 5.0e-16 88.2 126 36.5
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 3.2e-15 85.5 88 42.0
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 7.9e-14 80.9 117 41.9
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 1.8e-13 79.7 124 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 3.9e-13 78.6 127 37.0
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 1.1e-12 77.0 108 37.0
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 2.8e-11 72.4 51 70.6
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 3.7e-11 72.0 76 44.7
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 3.1e-10 68.9 79 40.5
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 1.7e-08 63.2 101 38.6
PRCOL_00003291 Prasinoderma coloniale HOM05D005465 ORTHO05D006612 2.1e-06 56.2 68 47.1


User provided reference genes

Program Settings