Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.6e-161 572.0 294 100.0
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.1e-150 534.3 282 98.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.0e-149 533.5 297 93.6
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.2e-139 499.2 297 86.2
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 5.3e-138 494.6 297 86.5
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.0e-136 490.3 298 84.2
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.7e-136 489.6 297 85.2
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.1e-135 486.9 302 84.1
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.0e-133 480.3 294 83.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 7.4e-132 474.2 297 79.5
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.8e-130 469.5 297 81.1
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 3.1e-130 468.8 297 80.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.2e-129 466.8 298 79.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.2e-129 466.8 298 79.9
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-128 463.0 297 76.8
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 76.4
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.5e-127 459.1 298 78.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 5.5e-127 458.0 297 78.1
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 5.5e-127 458.0 297 79.1
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.1e-126 456.1 297 78.5
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 78.8
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 4.7e-126 454.9 297 77.4
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.0e-126 454.1 297 78.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.0e-125 453.8 297 78.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.8e-125 453.0 298 76.8
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 2.3e-125 452.6 297 79.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.0e-125 452.2 297 78.1
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 77.2
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.8e-125 450.7 315 72.7
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.8e-125 450.7 315 72.7
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 8.8e-125 450.7 297 76.4
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.1e-124 450.3 295 76.9
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.0e-124 449.5 297 77.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.6e-124 449.1 297 78.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 3.3e-124 448.7 294 76.5
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.4e-124 448.4 294 76.2
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 4.4e-124 448.4 294 76.2
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 5.7e-124 448.0 305 74.8
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 75.4
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 76.4
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.7e-123 446.4 295 75.9
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.7e-123 446.4 295 75.9
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 2.8e-123 445.7 297 75.4
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 6.3e-123 444.5 297 75.4
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 8.2e-123 444.1 295 77.6
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 75.4
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 75.8
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.4e-122 443.4 297 76.8
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.4e-122 443.4 297 75.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.4e-122 442.6 305 74.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 3.1e-122 442.2 297 76.1
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 3.1e-122 442.2 297 76.1
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.3e-122 441.4 315 71.4
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.1e-122 440.7 297 74.7
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 9.1e-122 440.7 297 73.7
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.2e-121 440.3 297 76.4
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 4.5e-121 438.3 295 75.6
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 4.5e-121 438.3 297 74.4
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 4.5e-121 438.3 341 68.6
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 7.7e-121 437.6 297 74.7
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 7.7e-121 437.6 297 77.1
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 7.7e-121 437.6 297 74.4
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 2.9e-120 435.6 298 76.8
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.8e-120 435.3 294 74.1
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 5.0e-120 434.9 297 74.7
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 6.5e-120 434.5 294 74.1
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.5e-119 433.3 296 74.0
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.5e-119 433.3 297 75.1
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.9e-119 433.0 298 75.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 9.4e-119 430.6 297 72.7
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.6e-118 429.9 299 72.9
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.6e-118 429.9 297 72.4
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 3.6e-118 428.7 293 73.4
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 4.0e-117 425.2 297 73.4
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 5.2e-117 424.9 297 71.7
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 6.8e-117 424.5 297 74.1
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 8.8e-117 424.1 294 72.4
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 5.7e-116 421.4 292 72.9
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 9.8e-116 420.6 297 73.1
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 6.3e-115 417.9 295 72.2
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 8.3e-115 417.5 297 71.0
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 8.3e-115 417.5 281 74.4
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.1e-114 417.2 282 74.8
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-114 417.2 298 72.5
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.4e-114 416.8 295 71.5
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-114 415.2 297 71.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 5.4e-114 414.8 297 70.7
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 7.0e-114 414.5 262 79.8
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 9.1e-114 414.1 298 72.1
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 9.1e-114 414.1 298 70.5
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 70.2
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.6e-113 413.3 295 70.8
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.6e-113 413.3 295 70.8
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.6e-113 413.3 295 70.8
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.6e-113 413.3 297 71.0
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.0e-113 412.9 295 69.8
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.7e-113 412.5 295 70.2
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.7e-113 412.5 295 70.2
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.5e-113 412.1 296 70.6
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 5.9e-113 411.4 297 71.7
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 2.2e-112 409.5 295 70.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.2e-112 409.5 295 71.5
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 5.0e-112 408.3 285 71.9
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 9.4e-111 404.1 295 71.2
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 9.4e-111 404.1 277 75.5
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 2.0e-108 396.4 294 69.0
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.7e-107 393.3 250 79.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 4.9e-107 391.7 295 67.8
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 3.3e-103 379.0 297 69.4
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.3e-103 379.0 219 85.4
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-98 364.0 320 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.3e-96 356.3 294 60.2
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.2e-92 344.0 223 77.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.1e-90 337.4 223 76.2
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.6e-89 333.6 294 58.2
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-89 331.6 276 63.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 3.0e-88 329.3 297 59.6
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.9e-87 326.6 223 74.9
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 2.8e-86 322.8 215 73.5
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.8e-85 320.1 294 56.8
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.0e-84 316.6 262 60.3
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.5e-84 314.7 294 55.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 9.8e-84 314.3 290 57.2
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.1e-81 306.6 275 61.1
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.6e-81 305.4 295 55.6
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.1e-77 294.3 220 66.8
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.5e-71 273.1 228 63.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 5.8e-68 261.9 176 77.8
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 7.6e-68 261.5 256 53.9
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-65 252.7 223 59.6
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.0e-60 236.9 150 81.3
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.3e-56 224.2 214 58.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-56 223.8 149 72.5
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 4.3e-55 219.2 162 68.5
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 2.4e-50 203.4 143 65.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.2e-50 203.0 135 74.1
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.8e-43 179.5 266 38.7
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.9e-42 177.2 182 54.9
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.3e-38 164.5 307 36.5
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 6.3e-38 162.2 135 64.4
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.2e-35 153.7 106 72.6
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 9.7e-31 138.3 99 63.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.6e-30 137.5 107 69.2
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-27 127.1 132 56.8
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.0e-24 118.2 270 29.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 4.8e-22 109.4 81 67.9
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 6.9e-21 105.5 113 54.9
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 4.5e-20 102.8 62 80.6
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 5.9e-20 102.4 128 49.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-16 89.4 100 52.0
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-14 84.7 100 50.0
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 7.7e-12 75.5 97 46.4
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 6.1e-09 65.9 39 76.9
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 5.2e-08 62.8 69 50.7
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 8.8e-08 62.0 52 59.6
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.2e-07 61.6 45 64.4
CSS0041550 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D113305 7.5e-07 58.9 35 91.4
CSS0023282 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 9.7e-07 58.5 49 73.5
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 9.7e-07 58.5 52 55.8
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 9.7e-07 58.5 52 55.8


User provided reference genes

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