Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 6.0e-103 377.5 187 100.0
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 8.2e-76 287.3 199 75.9
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 2.0e-74 282.7 182 75.3
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 2.0e-74 282.7 180 76.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 6.5e-73 277.7 188 74.5
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 6.5e-73 277.7 182 75.3
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.5e-72 275.8 190 72.6
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.6e-71 273.1 187 73.3
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.6e-71 273.1 181 74.0
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.6e-71 271.9 185 75.1
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 4.7e-71 271.6 185 74.6
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.7e-71 271.6 181 71.8
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 6.1e-71 271.2 182 73.1
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.1e-71 271.2 181 73.5
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 3.0e-70 268.9 179 72.6
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 3.0e-70 268.9 182 72.0
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.9e-70 268.5 184 73.4
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 5.1e-70 268.1 190 69.5
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 5.1e-70 268.1 189 70.9
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 6.7e-70 267.7 174 75.3
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 8.8e-70 267.3 180 72.8
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 8.8e-70 267.3 181 72.9
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-69 266.5 184 73.4
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.5e-69 266.5 178 75.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 3.3e-69 265.4 179 73.2
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.4e-69 265.0 173 76.3
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.4e-69 265.0 180 72.2
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.4e-69 265.0 183 71.6
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 5.7e-69 264.6 191 67.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 7.4e-69 264.2 183 71.6
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.2e-68 262.7 184 70.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.8e-68 262.3 179 72.1
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.7e-68 261.9 190 66.8
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.7e-68 261.9 183 72.1
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.8e-68 261.5 182 70.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.8e-68 261.5 182 70.3
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 4.8e-68 261.5 191 67.5
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 8.2e-68 260.8 186 69.4
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.2e-68 260.8 191 67.0
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 191 68.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.4e-67 260.0 181 71.3
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.4e-67 260.0 191 68.1
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.8e-67 259.6 171 73.7
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.8e-67 259.6 193 68.4
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.8e-67 259.6 190 66.8
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 4.1e-67 258.5 182 69.2
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.1e-67 258.5 175 73.7
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 7.0e-67 257.7 179 68.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 9.1e-67 257.3 179 69.3
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 9.1e-67 257.3 179 69.8
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 9.1e-67 257.3 179 69.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.2e-66 256.9 188 66.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.2e-66 256.9 188 65.4
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-66 256.9 188 67.0
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.2e-66 256.9 173 74.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.5e-66 256.5 178 68.5
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.5e-66 256.5 174 72.4
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.5e-66 256.5 175 72.0
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.0e-66 256.1 176 72.2
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.0e-66 256.1 178 66.9
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.6e-66 255.8 179 68.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.6e-66 255.8 189 67.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 3.5e-66 255.4 177 72.9
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 3.5e-66 255.4 182 68.7
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 7.7e-66 254.2 172 72.1
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 7.7e-66 254.2 160 77.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 7.7e-66 254.2 175 72.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.0e-65 253.8 178 66.9
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.0e-65 253.8 186 71.0
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.3e-65 253.4 160 75.0
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-65 253.4 179 69.8
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.3e-65 253.4 180 68.9
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.7e-65 253.1 181 67.4
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.7e-65 253.1 181 67.4
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.7e-65 253.1 181 67.4
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 1.7e-65 253.1 172 70.9
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.7e-65 253.1 179 66.5
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 2.9e-65 252.3 178 67.4
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 2.9e-65 252.3 172 70.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 2.9e-65 252.3 178 67.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 3.8e-65 251.9 192 65.1
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 5.0e-65 251.5 183 68.9
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 5.0e-65 251.5 173 71.1
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 6.5e-65 251.1 184 66.8
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 6.5e-65 251.1 174 71.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 8.5e-65 250.8 172 70.9
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.9e-64 249.6 178 66.9
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 4.2e-64 248.4 174 72.4
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 5.5e-64 248.1 179 69.3
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 5.5e-64 248.1 178 69.1
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.6e-63 246.5 162 71.0
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.6e-63 246.5 185 64.3
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 2.7e-63 245.7 189 66.7
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 3.6e-63 245.4 164 72.6
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 8.0e-63 244.2 178 68.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.3e-62 242.7 182 68.7
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 2.0e-61 239.6 173 68.8
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.7e-60 236.5 173 66.5
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.6e-58 229.9 193 59.6
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.9e-58 228.0 189 60.3
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.2e-55 220.3 170 64.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 5.2e-54 214.9 123 79.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.5e-53 213.4 167 64.1
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.4e-53 212.2 178 59.6
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 3.5e-50 202.2 169 56.8
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 4.5e-50 201.8 182 54.9
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 5.0e-49 198.4 152 64.5
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.9e-48 196.4 189 56.1
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.7e-47 191.8 177 58.8
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-45 186.8 122 76.2
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-45 186.8 123 76.4
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.0e-45 186.4 151 61.6
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.4e-45 185.3 179 53.6
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 7.5e-45 184.5 171 56.1
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 9.8e-45 184.1 148 60.8
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.7e-44 183.3 125 73.6
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.7e-41 173.3 146 58.9
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.9e-41 172.6 143 55.9
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 6.1e-39 164.9 113 69.9
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 2.4e-35 152.9 184 48.4
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.0e-33 147.5 91 79.1
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 4.3e-32 142.1 128 50.0
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.4e-30 137.1 84 77.4
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 8.9e-30 134.4 126 51.6
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.6e-29 132.9 146 47.3
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 5.8e-29 131.7 178 43.8
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 5.8e-29 131.7 178 43.8
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.9e-25 119.0 142 45.8
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 2.6e-21 106.3 75 64.0
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.3e-20 104.0 180 35.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.1e-18 96.7 51 86.3
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.3e-17 94.0 114 41.2
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 2.3e-17 93.2 142 38.7
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 2.3e-17 93.2 142 38.7
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 9.5e-16 87.8 58 72.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 8.6e-09 64.7 55 54.5


User provided reference genes

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