Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.6e-78 294.7 168 100.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 6.1e-54 214.5 179 68.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.1e-53 211.5 184 74.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.8e-53 210.7 179 65.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.3e-51 206.8 189 59.3
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.7e-49 197.6 183 62.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.8e-48 195.3 186 61.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 8.5e-48 194.1 195 61.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 8.5e-48 194.1 189 64.6
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 8.5e-48 194.1 189 64.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.1e-47 193.7 190 68.4
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.9e-47 193.0 196 66.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.2e-46 190.3 190 57.4
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.1e-46 189.5 178 64.6
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.7e-46 189.1 204 62.3
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 6.1e-46 188.0 204 59.3
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 7.9e-46 187.6 195 66.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.4e-45 186.8 194 67.0
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.0e-45 185.7 202 61.4
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 3.0e-45 185.7 183 61.2
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 5.1e-45 184.9 195 52.8
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 8.8e-45 184.1 191 64.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.1e-44 183.7 191 54.5
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.5e-44 183.3 206 58.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.7e-44 181.4 183 59.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 7.4e-44 181.0 214 61.2
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.2e-43 179.5 187 59.4
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.8e-43 179.1 176 62.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 6.3e-43 177.9 166 66.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 8.2e-43 177.6 198 61.1
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-42 177.2 206 62.1
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.4e-42 176.8 190 65.3
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 3.1e-42 175.6 193 53.9
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.1e-42 175.6 187 57.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 7.0e-42 174.5 218 57.3
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 9.1e-42 174.1 188 59.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-41 173.3 213 54.9
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-41 173.3 213 54.9
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.6e-41 173.3 204 58.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.6e-41 173.3 217 55.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.6e-41 173.3 206 60.2
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.6e-41 172.6 170 58.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.6e-41 172.6 196 60.2
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 4.5e-41 171.8 195 52.8
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 5.9e-41 171.4 219 55.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.7e-41 171.0 226 46.5
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-40 170.6 204 50.0
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.3e-40 170.2 201 58.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 5.0e-40 168.3 241 50.2
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.5e-39 166.8 201 55.2
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.9e-39 166.4 203 54.7
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.9e-39 166.4 194 61.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.5e-39 166.0 207 48.3
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.5e-39 166.0 204 53.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.2e-39 165.6 180 53.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.2e-39 165.2 244 53.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 5.5e-39 164.9 203 53.2
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 5.5e-39 164.9 193 51.8
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 9.4e-39 164.1 206 48.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.4e-39 164.1 223 49.8
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-38 163.3 193 56.0
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.7e-38 162.5 197 49.7
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.6e-38 162.2 181 61.3
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 8.0e-38 161.0 199 52.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.3e-37 159.5 213 56.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.3e-37 159.5 194 60.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.3e-37 159.5 197 53.3
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.0e-37 159.1 211 53.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 3.0e-37 159.1 237 48.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.0e-37 159.1 207 54.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.2e-37 158.3 224 48.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.1e-36 157.1 199 47.2
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-36 157.1 233 52.8
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.5e-36 156.8 188 56.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.4e-36 155.2 186 58.6
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.4e-36 155.2 178 57.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 7.5e-36 154.5 196 57.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.8e-35 151.8 184 51.6
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 8.2e-35 151.0 205 45.4
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-34 150.6 191 56.5
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.4e-34 149.4 183 60.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-34 149.4 197 43.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.1e-34 149.1 206 51.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.3e-34 148.3 187 58.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.5e-33 145.6 199 55.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 4.5e-33 145.2 173 46.2
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.7e-33 144.4 198 53.0
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.0e-32 144.1 226 46.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.0e-32 144.1 238 50.8
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.3e-32 143.7 188 56.4
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 3.8e-32 142.1 198 53.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.8e-32 142.1 174 46.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 3.8e-32 142.1 187 57.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 8.5e-32 141.0 192 50.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-31 140.2 190 56.8
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 4.2e-31 138.7 192 41.1
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.5e-31 138.3 197 45.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 7.2e-31 137.9 200 54.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 7.2e-31 137.9 186 46.2
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-31 137.5 198 54.0
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.6e-30 136.7 197 45.2
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.7e-30 136.0 199 49.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 3.6e-30 135.6 183 49.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 4.7e-30 135.2 218 40.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 6.1e-30 134.8 195 54.4
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.0e-30 134.4 186 56.5
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-29 134.0 182 54.4
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-29 133.3 182 57.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-29 132.9 205 51.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-29 132.9 205 51.7
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-29 132.5 179 58.1
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.0e-29 132.5 180 54.4
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 4.0e-29 132.1 182 56.6
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 5.2e-29 131.7 182 57.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 6.8e-29 131.3 194 54.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 6.8e-29 131.3 212 47.6
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 8.8e-29 131.0 206 40.8
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.8e-29 131.0 122 66.4
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-28 130.2 200 42.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-28 129.8 197 53.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-28 129.8 200 42.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.6e-28 129.4 175 55.4
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.6e-28 129.4 177 46.9
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.6e-28 129.4 235 38.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 3.4e-28 129.0 203 41.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 4.4e-28 128.6 172 45.3
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 4.4e-28 128.6 172 45.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.8e-28 127.5 195 52.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 4.8e-27 125.2 211 50.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.4e-26 123.6 191 49.2
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-26 123.2 174 42.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-26 123.2 181 50.8
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.4e-26 122.9 184 54.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 2.4e-26 122.9 213 39.4
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-26 122.5 182 50.5
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-26 122.5 210 40.5
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.4e-26 121.7 170 43.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.0e-26 121.3 170 45.3
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.1e-26 120.9 189 52.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-25 120.6 182 51.6
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-25 120.6 213 39.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-25 120.6 183 53.6
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-25 119.8 128 50.8
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.0e-25 119.8 206 50.5
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 4.5e-25 118.6 218 47.7
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 5.9e-25 118.2 182 50.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 6.5e-24 114.8 172 43.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 6.5e-24 114.8 172 43.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 6.5e-24 114.8 172 43.0
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.5e-24 114.4 200 42.5
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.9e-23 113.2 176 46.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.5e-23 111.7 179 50.8
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 9.4e-23 110.9 174 40.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.1e-22 109.8 175 47.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-22 108.2 127 58.3
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 6.1e-22 108.2 127 58.3
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 8.0e-22 107.8 127 59.1
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 8.0e-22 107.8 127 59.1
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 8.0e-22 107.8 219 46.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.7e-19 100.1 106 53.8
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.5e-17 92.4 127 56.7
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.8e-16 89.0 97 56.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-13 79.7 158 31.0
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-13 79.7 210 29.0
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-12 77.4 198 40.9
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-12 77.4 198 40.9
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.5e-12 77.0 198 39.9
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.9e-11 72.8 104 38.5
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-11 72.0 42 71.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.4e-10 69.7 219 26.9
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-09 67.4 166 30.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.5e-09 65.9 117 31.6
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.9e-09 65.1 35 77.1
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.3e-07 58.9 128 32.8
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 9.5e-07 57.8 26 96.2
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.2e-06 57.4 112 30.4
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 2.8e-06 56.2 46 52.2
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 3.6e-06 55.8 65 47.7


User provided reference genes

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