Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.7e-123 444.9 226 100.0
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.4e-122 441.0 226 99.1
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.0e-109 398.3 224 88.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.5e-108 396.4 222 88.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 2.2e-107 392.5 240 83.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 5.6e-103 377.9 226 83.2
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.4e-100 368.6 228 81.1
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 5.8e-100 367.9 228 80.7
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.3e-99 366.7 228 79.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 6.4e-99 364.4 216 84.3
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 7.1e-98 360.9 221 79.6
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 7.8e-97 357.5 218 79.8
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 228 78.1
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.0e-96 357.1 230 79.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.7e-96 356.3 226 79.6
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.3e-96 355.9 223 78.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 3.0e-96 355.5 230 77.8
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 3.0e-96 355.5 204 86.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 5.1e-96 354.8 225 78.2
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 8.6e-96 354.0 223 78.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.5e-95 352.4 226 77.4
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.3e-95 352.1 228 77.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 3.3e-95 352.1 230 78.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.3e-95 351.7 228 77.6
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.3e-95 351.7 223 77.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.3e-95 351.7 218 79.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.6e-95 351.3 228 77.2
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 5.6e-95 351.3 226 77.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.3e-95 350.9 223 77.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 7.3e-95 350.9 228 75.9
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 9.5e-95 350.5 218 80.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 9.5e-95 350.5 226 78.3
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.1e-94 349.4 222 77.9
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.6e-94 348.6 226 77.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 4.7e-94 348.2 226 77.9
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 4.7e-94 348.2 223 76.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 4.7e-94 348.2 223 76.7
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 6.2e-94 347.8 230 76.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 228 75.4
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 6.2e-94 347.8 226 77.4
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 8.1e-94 347.4 217 78.8
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 8.1e-94 347.4 231 76.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 77.0
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.1e-93 347.1 219 77.6
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 77.4
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.4e-93 346.7 223 76.2
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-93 346.7 226 77.0
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.4e-93 346.7 223 75.8
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.4e-93 346.7 221 77.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 2.3e-93 345.9 226 75.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.3e-93 345.9 218 78.0
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 4.0e-93 345.1 226 74.8
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.0e-93 345.1 223 76.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 4.0e-93 345.1 222 77.0
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 5.2e-93 344.7 222 75.7
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.2e-93 344.7 226 77.0
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.2e-93 344.7 222 76.6
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.8e-93 344.4 224 75.9
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.8e-93 344.4 221 76.5
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 6.8e-93 344.4 232 75.0
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 8.9e-93 344.0 227 75.3
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.2e-92 343.6 223 76.7
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-92 343.6 226 74.8
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-92 343.2 219 76.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.5e-92 343.2 224 75.4
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.0e-92 342.8 221 77.8
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.0e-92 342.8 219 76.3
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 3.4e-92 342.0 225 74.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.4e-92 342.0 223 75.8
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 3.4e-92 342.0 223 74.4
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.4e-92 341.7 224 75.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 9.9e-92 340.5 221 76.0
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-91 340.1 222 73.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 226 75.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.2e-91 339.3 221 75.1
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.2e-91 339.3 223 74.4
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.9e-91 339.0 223 73.1
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-91 338.6 225 74.2
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.7e-91 338.6 221 77.4
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-91 338.2 225 74.2
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.9e-91 338.2 220 76.4
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.9e-90 336.3 224 75.4
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.9e-90 336.3 225 73.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.4e-90 335.9 223 75.8
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 5.4e-90 334.7 219 74.4
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.1e-89 332.8 226 73.5
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.7e-89 332.4 226 74.3
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 3.5e-89 332.0 220 75.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.8e-89 330.9 218 73.9
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-88 330.5 219 74.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.9e-88 328.6 211 79.6
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 8.6e-88 327.4 226 71.2
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 8.6e-88 327.4 224 74.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.9e-87 326.2 227 74.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 7.3e-87 324.3 226 70.8
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-86 323.6 215 74.9
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-86 323.6 215 74.9
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-86 323.6 226 70.4
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.1e-86 322.8 226 70.8
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.4e-85 320.1 209 74.6
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.0e-85 318.5 206 74.8
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 5.2e-85 318.2 219 73.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 6.8e-85 317.8 227 72.2
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.2e-84 317.0 207 74.4
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.5e-84 316.6 206 74.8
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-84 315.8 226 72.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.4e-84 315.5 226 72.1
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.4e-84 315.1 212 71.7
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.8e-84 314.7 226 70.8
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-83 312.0 209 73.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.8e-83 312.0 209 73.7
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 6.4e-83 311.2 204 75.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.4e-83 311.2 205 75.1
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.1e-82 310.5 220 73.2
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.1e-82 310.5 201 79.1
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.4e-82 310.1 203 74.9
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 4.2e-82 308.5 204 73.0
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.1e-81 306.2 224 67.0
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.7e-81 305.8 262 63.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.0e-81 304.7 252 63.9
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-80 303.1 204 73.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.5e-79 299.3 210 68.6
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.5e-79 299.3 224 70.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 7.3e-79 297.7 205 68.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.6e-78 296.6 216 69.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.8e-78 295.8 202 71.8
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 5.3e-77 291.6 186 78.0
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.6e-76 289.3 202 70.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.4e-76 288.5 211 70.6
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 9.9e-76 287.3 221 62.9
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.4e-75 284.6 226 66.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 3.2e-74 282.3 208 66.3
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 5.4e-74 281.6 213 63.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.1e-71 273.9 226 61.9
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-68 263.1 175 73.7
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 7.6e-68 261.2 211 64.0
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.8e-67 258.8 160 80.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.2e-66 255.4 223 61.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.5e-65 252.3 231 59.3
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-64 250.4 204 63.2
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.1e-64 248.4 221 61.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 8.7e-64 247.7 214 60.3
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.5e-63 246.1 180 69.4
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.1e-61 239.2 206 62.1
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.0e-61 238.8 218 59.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 9.0e-61 237.7 159 74.2
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 6.5e-59 231.5 213 56.3
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.5e-58 229.6 152 77.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.0e-56 224.2 225 53.8
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.3e-56 223.8 218 54.1
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.3e-56 223.0 183 66.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.1e-55 220.7 209 56.0
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.9e-55 219.9 186 63.4
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.9e-53 211.5 226 54.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.8e-51 205.7 211 51.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.3e-43 180.6 213 53.1
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 3.6e-41 172.6 240 42.1
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.7e-40 168.3 113 76.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.3e-38 164.1 240 42.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.8e-38 162.2 231 43.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.9e-34 150.2 94 75.5
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.2e-34 148.3 104 68.3
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 9.4e-34 147.9 217 41.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-33 147.1 111 64.0
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-31 139.0 115 67.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.5e-28 129.0 114 59.6
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.1e-26 124.4 157 43.3
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 3.2e-26 122.9 78 75.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.0e-20 103.6 79 67.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 7.2e-18 95.1 83 63.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.6e-15 86.7 201 30.8
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-13 80.9 73 56.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.7e-09 65.9 105 40.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.4e-08 64.3 74 54.1
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 9.8e-07 58.2 40 57.5


User provided reference genes

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