Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.1e-57 226.5 120 100.0
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 8.5e-34 147.1 121 68.6
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.3e-31 139.0 123 66.7
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.9e-27 124.4 119 60.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 5.0e-26 121.3 105 64.8
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.1e-25 120.2 133 55.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 2.5e-25 119.0 123 56.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.6e-24 116.3 120 55.0
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 8.0e-24 114.0 119 52.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 8.0e-24 114.0 121 57.0
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.2e-22 110.2 141 48.2
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-22 110.2 122 50.8
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-22 110.2 120 50.0
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 2.6e-22 109.0 127 52.8
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.6e-22 109.0 135 51.1
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 5.7e-22 107.8 133 53.4
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 7.5e-22 107.5 108 63.0
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 8.3e-21 104.0 120 52.5
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.1e-20 103.6 125 48.8
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-20 102.8 121 52.9
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.6e-19 99.8 110 56.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.0e-19 99.4 133 45.1
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.7e-19 99.0 123 48.8
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.7e-19 99.0 137 46.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.7e-19 99.0 137 46.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.5e-19 98.6 124 45.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 5.9e-19 97.8 130 44.6
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.9e-19 97.8 131 45.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 7.7e-19 97.4 127 51.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 7.7e-19 97.4 118 49.2
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-18 97.1 137 47.4
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.3e-18 96.7 104 48.1
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.7e-18 96.3 125 48.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.2e-18 95.9 135 45.9
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.2e-18 95.9 130 43.8
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.2e-18 95.9 127 44.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 2.2e-18 95.9 121 47.9
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.8e-18 95.1 110 54.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 5.0e-18 94.7 110 53.6
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.5e-18 94.4 130 46.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 8.5e-18 94.0 127 45.7
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.5e-18 94.0 124 47.6
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-17 93.6 127 47.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.5e-17 93.2 127 46.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.5e-17 92.4 127 46.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.5e-17 92.4 117 47.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.5e-17 92.4 125 48.8
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.2e-17 92.0 127 45.7
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-17 91.3 130 46.2
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-16 90.1 129 44.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-16 90.1 128 45.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-16 90.1 128 45.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-16 90.1 128 45.3
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-16 89.7 129 46.5
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.1e-16 89.4 115 47.0
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.1e-16 89.4 125 46.4
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.1e-16 89.4 113 51.3
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.6e-16 88.6 125 47.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.1e-16 87.8 127 45.7
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.0e-16 87.4 129 43.4
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.0e-15 87.0 129 43.4
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.0e-15 87.0 114 49.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 114 48.2
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.3e-15 85.9 128 44.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.3e-15 85.9 111 48.6
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.3e-15 85.9 132 41.7
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.3e-15 85.9 129 46.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.3e-15 85.9 133 43.6
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.0e-15 85.5 127 46.5
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.0e-15 85.5 125 45.6
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.0e-15 85.5 105 48.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.0e-15 85.5 129 48.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.0e-15 85.1 130 44.6
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.0e-15 85.1 128 44.5
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 4.0e-15 85.1 125 46.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-15 84.7 128 42.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-15 84.7 128 42.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 5.2e-15 84.7 96 53.1
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 5.2e-15 84.7 129 46.5
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 6.8e-15 84.3 127 46.5
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 6.8e-15 84.3 129 41.1
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 6.8e-15 84.3 127 44.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 6.8e-15 84.3 137 44.5
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 6.8e-15 84.3 128 46.1
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 8.8e-15 84.0 126 43.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 8.8e-15 84.0 125 41.6
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 8.8e-15 84.0 125 41.6
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 8.8e-15 84.0 126 43.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 8.8e-15 84.0 126 43.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 8.8e-15 84.0 126 43.7
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 126 43.7
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 125 46.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.2e-14 83.6 129 48.1
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-14 83.2 130 42.3
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 43.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 40.8
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 113 47.8
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 126 43.7
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.5e-14 83.2 124 43.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 129 47.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 41.6
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.5e-14 83.2 110 48.2
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-14 82.8 127 43.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.0e-14 82.8 127 44.9
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-14 82.4 127 43.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-14 82.4 127 43.3
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-14 82.4 122 44.3
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-14 82.4 127 43.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-14 82.4 125 40.8
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-14 82.4 127 43.3
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-14 82.4 127 43.3
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-14 82.4 122 44.3
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.6e-14 82.4 92 48.9
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 3.4e-14 82.0 125 42.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.4e-14 82.0 126 42.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.4e-14 82.0 126 42.1
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.4e-14 82.0 131 42.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.4e-14 82.0 139 41.7
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-14 81.6 125 40.8
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.4e-14 81.6 125 45.6
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.4e-14 81.6 125 45.6
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 5.7e-14 81.3 123 49.6
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 7.5e-14 80.9 129 45.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 7.5e-14 80.9 82 51.2
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.8e-14 80.5 91 50.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-13 80.1 124 44.4
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-13 80.1 127 44.1
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.7e-13 79.7 125 41.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-13 79.3 128 40.6
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.2e-13 79.3 123 42.3
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.7e-13 78.6 126 41.3
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 3.7e-13 78.6 132 41.7
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.7e-13 78.6 126 41.3
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.7e-13 78.6 122 44.3
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.8e-13 78.2 116 43.1
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 6.3e-13 77.8 109 46.8
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 8.3e-13 77.4 134 41.8
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.1e-12 77.0 108 46.3
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-12 76.6 115 43.5
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.4e-12 76.6 113 46.0
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.8e-12 76.3 127 44.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-12 75.9 156 36.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.4e-12 75.9 130 41.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.4e-12 75.9 125 42.4
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.1e-12 75.1 113 47.8
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.4e-12 74.7 129 42.6
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.4e-12 74.7 125 44.8
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.4e-12 74.7 132 37.1
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.0e-12 74.3 80 51.2
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.2e-11 73.6 106 43.4
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.6e-11 73.2 126 42.9
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-11 72.4 127 43.3
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.7e-11 72.4 126 42.1
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 3.5e-11 72.0 116 41.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.3e-10 70.1 133 37.6
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-10 70.1 130 40.8
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-10 70.1 128 41.4
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.8e-10 68.6 72 54.2
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.8e-10 68.6 109 42.2
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-10 68.2 128 42.2
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 8.6e-10 67.4 120 40.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-09 67.0 127 39.4
Lsat_1_v5_gn_9_118581 Lactuca sativa HOM05D003805 ORTHO05D004300 2.5e-09 65.9 64 54.7
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 97 40.2
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.8e-08 62.4 54 57.4
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-08 62.0 147 33.3
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 6.1e-08 61.2 92 46.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-08 60.8 39 66.7
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-08 60.8 114 37.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-08 60.8 114 37.7
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 8.0e-08 60.8 114 37.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-07 60.1 130 38.5
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.4e-07 60.1 130 38.5
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.4e-07 60.1 130 38.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-07 60.1 110 40.0
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-07 59.3 162 31.5
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 3.0e-07 58.9 132 37.9
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.0e-07 58.9 107 43.0
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.0e-07 58.5 84 41.7
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.0e-06 56.2 86 43.0
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 5.7e-06 54.7 64 42.2


User provided reference genes

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