Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 6.1e-103 378.3 323 100.0
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 5.6e-80 302.0 175 86.9
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 7.3e-80 301.6 174 85.1
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.6e-79 299.3 174 87.4
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.0e-78 297.7 172 88.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.8e-78 297.0 174 86.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.0e-78 296.2 174 85.6
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.0e-78 296.2 174 85.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 5.2e-78 295.4 172 87.2
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.2e-77 294.3 173 85.5
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.0e-77 293.5 174 86.2
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.0e-77 293.5 174 83.9
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 2.6e-77 293.1 174 85.1
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 4.4e-77 292.4 169 87.0
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 5.7e-77 292.0 175 85.7
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-76 290.4 168 86.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.7e-76 290.4 168 86.9
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.9e-76 288.9 174 85.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 8.3e-76 288.1 174 83.9
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.3e-76 288.1 168 86.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 8.3e-76 288.1 173 82.7
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 8.3e-76 288.1 173 87.3
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.4e-75 287.3 172 83.7
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.2e-75 286.2 174 82.8
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.2e-75 286.2 174 82.8
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.2e-75 286.2 174 82.8
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 3.2e-75 286.2 174 82.8
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 4.1e-75 285.8 171 84.8
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 7.0e-75 285.0 172 83.1
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 9.2e-75 284.6 174 82.8
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 9.2e-75 284.6 174 82.2
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 9.2e-75 284.6 172 84.3
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 9.2e-75 284.6 174 82.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.0e-74 283.5 174 81.6
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.5e-74 282.7 174 81.0
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 4.6e-74 282.3 172 81.4
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.7e-73 280.4 174 80.5
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.7e-73 280.4 170 82.4
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 3.0e-73 279.6 174 81.6
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.9e-73 279.3 174 81.0
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 5.0e-73 278.9 172 82.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.0e-73 278.9 171 82.5
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 6.6e-73 278.5 173 81.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.1e-72 277.7 173 80.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 2.5e-72 276.6 172 82.0
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.5e-72 276.6 171 81.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 2.5e-72 276.6 173 80.9
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 3.3e-72 276.2 172 82.0
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 7.3e-72 275.0 174 81.6
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 6.2e-71 271.9 174 77.0
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 8.0e-71 271.6 167 80.8
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.8e-70 270.4 173 79.8
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 5.2e-70 268.9 175 79.4
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 6.8e-70 268.5 172 81.4
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 6.8e-70 268.5 173 79.2
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.5e-69 267.3 175 76.6
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 2.9e-68 263.1 175 75.4
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.9e-68 262.3 170 79.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.9e-68 262.3 170 79.4
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 6.4e-68 261.9 172 79.1
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 8.3e-68 261.5 169 78.1
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.4e-67 260.0 175 74.3
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 3.2e-67 259.6 175 74.3
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 3.2e-67 259.6 175 74.3
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 3.2e-67 259.6 175 74.3
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 3.2e-67 259.6 175 74.3
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 3.2e-67 259.6 175 74.3
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 7.0e-67 258.5 221 64.7
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 7.0e-67 258.5 206 68.4
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 3.5e-66 256.1 175 74.3
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 4.6e-66 255.8 175 74.9
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 4.6e-66 255.8 175 74.9
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 7.8e-66 255.0 172 74.4
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.0e-65 254.6 171 74.9
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.3e-65 254.2 172 77.3
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.5e-64 250.0 203 65.0
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 2.5e-64 250.0 150 86.0
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 3.6e-63 246.1 173 75.1
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 4.7e-63 245.7 174 73.0
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.1e-62 244.6 198 65.7
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 3.1e-62 243.0 156 78.8
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 8.9e-62 241.5 166 71.7
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 5.8e-61 238.8 166 74.1
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.2e-60 236.9 168 73.2
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.9e-60 236.5 149 82.6
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 8.3e-60 235.0 171 71.9
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.2e-59 231.5 193 66.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 3.5e-58 229.6 166 68.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.0e-57 228.0 203 64.0
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 6.6e-57 225.3 152 78.3
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.1e-56 224.6 150 78.7
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 9.5e-56 221.5 169 66.9
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 3.6e-55 219.5 156 73.1
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 8.1e-55 218.4 174 64.9
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 2.6e-53 213.4 168 66.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.1e-50 203.8 149 69.8
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.6e-47 194.1 131 74.0
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.2e-46 189.1 118 83.9
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 2.7e-34 150.2 73 91.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-31 141.0 108 70.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-31 141.0 108 70.4
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 3.7e-31 139.8 93 81.7
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-28 131.0 65 92.3
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-27 128.3 67 85.1
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 7.9e-26 122.1 124 58.1
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 4.3e-24 116.3 163 42.9
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.6e-23 114.4 95 65.3
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 8.2e-23 112.1 71 70.4
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 2.6e-21 107.1 174 37.4
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 5.5e-19 99.4 89 66.3
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 3.5e-18 96.7 69 78.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.9e-18 95.5 78 73.1
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 5.1e-17 92.8 78 70.5
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.2e-15 87.4 67 67.2
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.1e-14 83.2 64 70.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-12 77.8 51 82.4
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 1.6e-10 71.2 64 64.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.7e-10 70.5 40 90.0
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.1e-10 69.3 48 66.7
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 3.3e-08 63.5 39 84.6
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 9.1e-06 55.5 50 70.0


User provided reference genes

Program Settings