Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 3.0e-76 288.5 152 100.0
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 1.5e-75 286.2 152 99.3
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 2.6e-51 205.7 151 74.2
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 4.4e-51 204.9 153 76.5
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 1.3e-50 203.4 148 77.7
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 4.8e-50 201.4 146 78.1
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 4.5e-48 194.9 144 74.3
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 7.2e-46 187.6 144 76.4
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 1.5e-43 179.9 146 70.5
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 9.7e-43 177.2 146 70.5
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 4.8e-42 174.9 147 69.4
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 1.2e-40 170.2 146 66.4
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 2.6e-40 169.1 146 69.2
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 4.5e-40 168.3 124 76.6
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 5.0e-39 164.9 146 66.4
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 4.2e-38 161.8 145 64.8
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 2.1e-37 159.5 146 66.4
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 4.0e-36 155.2 145 61.4
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 5.2e-36 154.8 145 62.8
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 2.0e-35 152.9 143 63.6
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 2.6e-35 152.5 144 63.2
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 5.7e-35 151.4 145 61.4
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 7.5e-35 151.0 142 64.1
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 1.7e-34 149.8 149 62.4
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 1.7e-34 149.8 151 60.9
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 6.3e-34 147.9 146 58.2
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 6.3e-34 147.9 142 61.3
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 8.2e-34 147.5 146 58.2
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 1.1e-33 147.1 146 57.5
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 1.1e-33 147.1 146 57.5
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 1.4e-33 146.7 152 61.8
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 1.8e-33 146.4 128 66.4
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 3.1e-33 145.6 145 59.3
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 4.1e-33 145.2 143 58.7
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 7.0e-33 144.4 144 57.6
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 9.1e-33 144.1 129 67.4
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.7e-32 142.5 145 57.9
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 3.5e-32 142.1 151 57.6
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 4.5e-32 141.7 151 57.6
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 1.0e-31 140.6 145 61.4
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 1.0e-31 140.6 145 57.9
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 1.0e-31 140.6 139 63.3
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 1.3e-31 140.2 131 61.8
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 2.9e-31 139.0 145 56.6
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 3.8e-31 138.7 133 63.2
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 5.0e-31 138.3 151 57.0
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 6.5e-31 137.9 143 60.1
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 6.5e-31 137.9 144 54.9
Aqoxy5G00947 Aquilegia oxysepala HOM05D006398 ORTHO05D007983 1.1e-30 137.1 148 56.8
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 1.1e-30 137.1 145 56.6
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 1.9e-30 136.3 145 56.6
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 3.2e-30 135.6 133 61.7
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 4.2e-30 135.2 145 55.2
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 5.5e-30 134.8 150 55.3
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 5.5e-30 134.8 144 59.0
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 9.4e-30 134.0 146 55.5
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 1.2e-29 133.7 148 54.7
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 3.6e-29 132.1 145 58.6
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 1.0e-28 130.6 150 54.7
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.3e-28 129.4 145 56.6
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 2.3e-28 129.4 147 54.4
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 3.0e-28 129.0 94 74.5
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 2.0e-27 126.3 146 55.5
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 5.7e-27 124.8 146 54.8
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 1.3e-26 123.6 151 53.0
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 1.3e-26 123.6 145 53.1
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 1.7e-26 123.2 146 51.4
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.2e-26 122.9 137 55.5
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 2.8e-26 122.5 88 77.3
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 4.8e-26 121.7 145 53.1
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 8.3e-26 120.9 146 53.4
HPP92_018846 Vanilla planifolia HOM05D006398 ORTHO05D007983 8.3e-26 120.9 146 50.0
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 2.4e-25 119.4 147 59.2
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 4.5e-24 115.2 147 57.1
TAR628G0945 Trochodendron aralioides HOM05D006398 ORTHO05D007983 4.5e-24 115.2 107 63.6
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 1.0e-23 114.0 143 51.0
Ah.02g115220 Amaranthus hybridus HOM05D006398 ORTHO05D007983 2.5e-22 109.4 145 46.9
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 2.5e-22 109.4 140 49.3
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 3.2e-22 109.0 148 52.7
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 7.2e-22 107.8 123 56.9
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 9.5e-22 107.5 138 51.4
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 9.5e-22 107.5 76 72.4
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 2.1e-21 106.3 145 49.0
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 2.8e-21 105.9 140 47.9
EL10Ac5g11754 Beta vulgaris HOM05D006398 ORTHO05D007983 3.6e-21 105.5 145 45.5
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 3.6e-21 105.5 146 47.9
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 4.7e-21 105.1 142 49.3
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 4.0e-20 102.1 140 47.1
HPP92_018898 Vanilla planifolia HOM05D006398 ORTHO05D007983 4.0e-20 102.1 146 45.9
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 4.4e-19 98.6 101 59.4
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.3e-18 97.1 106 54.7
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.3e-18 97.1 151 48.3
Os02g0193500 Oryza sativa ssp. japonica HOM05D006398 ORTHO05D007983 2.8e-18 95.9 146 43.8
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 4.9e-18 95.1 162 43.2
Glyma.01G155800 Glycine max HOM05D006398 ORTHO05D007983 1.8e-17 93.2 129 47.3
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 9.2e-17 90.9 146 41.1
Lalb_Chr05g0215011 Lupinus albus HOM05D006398 ORTHO05D007983 2.8e-13 79.3 144 38.9
Thhalv10010838m.g Eutrema salsugineum HOM05D006398 ORTHO05D007983 4.7e-13 78.6 94 51.1
SHI11157 Sapria himalayana HOM05D006398 ORTHO05D007983 1.0e-12 77.4 134 42.5
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 3.0e-12 75.9 148 40.5
Carub.0005s1788 Capsella rubella HOM05D006398 ORTHO05D007983 8.9e-12 74.3 131 40.5
AT3G51500 Arabidopsis thaliana HOM05D006398 ORTHO05D007983 1.2e-11 73.9 97 47.4
A03p48310 Brassica napus HOM05D006398 ORTHO05D007983 1.2e-11 73.9 110 46.4
Sp5g10740 Schrenkiella parvula HOM05D006398 ORTHO05D007983 1.5e-11 73.6 100 47.0
SEGI_02084 Sequoiadendron giganteum HOM05D006398 ORTHO05D007983 2.6e-11 72.8 136 38.2
Cpa.g.sc178.36 Carica papaya HOM05D006398 ORTHO05D007983 7.5e-11 71.2 104 43.3
arahy.Tifrunner.gnm1.ann1.GQ5KDA Arachis hypogaea HOM05D006398 ORTHO05D007983 1.1e-09 67.4 51 68.6
AUR62036260 Chenopodium quinoa HOM05D006398 ORTHO05D007983 1.6e-08 63.5 146 32.9
AL5G31940 Arabidopsis lyrata HOM05D006398 ORTHO05D007983 2.0e-08 63.2 94 44.7
BraA01t02248Z Brassica rapa HOM05D006398 ORTHO05D007983 2.0e-08 63.2 112 42.9
A01p23410 Brassica napus HOM05D006398 ORTHO05D007983 3.5e-08 62.4 95 45.3
THA.LOC109117268 Tarenaya hassleriana HOM05D006398 ORTHO05D007983 4.6e-08 62.0 123 43.9
BcaNung00381 Brassica carinata HOM05D006398 ORTHO05D007983 5.9e-08 61.6 118 37.3
AUR62039711 Chenopodium quinoa HOM05D006398 ORTHO05D007983 1.3e-07 60.5 147 32.7
BcaC06g33030 Brassica carinata HOM05D006398 ORTHO05D007983 1.7e-07 60.1 110 39.1
C01p29040 Brassica napus HOM05D006398 ORTHO05D007983 3.0e-07 59.3 112 42.0
BolC1t02836H Brassica oleracea HOM05D006398 ORTHO05D007983 3.0e-07 59.3 112 42.0
Aa31LG4G7260 Aethionema arabicum HOM05D000087 ORTHO05D002585 1.9e-06 56.6 60 50.0
C07p46340 Brassica napus HOM05D006398 ORTHO05D007983 2.5e-06 56.2 112 37.5
CARHR161080 Cardamine hirsuta HOM05D006398 ORTHO05D007983 3.3e-06 55.8 95 38.9


User provided reference genes

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