Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 0.0e+00 1101.7 563 100.0
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.6e-242 840.5 544 78.5
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.5e-234 816.2 568 75.7
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.3e-233 813.1 567 73.7
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 4.9e-233 811.2 555 75.0
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.2e-232 808.1 653 67.8
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.2e-231 806.6 516 79.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.1e-231 805.8 565 72.9
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 6.6e-230 800.8 543 73.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 6.6e-230 800.8 546 74.7
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 6.6e-230 800.8 521 77.7
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 2.5e-229 798.9 546 75.8
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.3e-229 798.5 546 75.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.6e-229 797.7 563 75.1
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.3e-228 796.6 571 71.1
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.3e-228 796.6 536 76.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.1e-228 795.8 522 77.0
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.8e-228 794.7 533 76.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.1e-227 793.5 546 74.4
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 6.9e-227 790.8 523 76.1
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.6e-226 788.9 550 73.3
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.6e-226 788.9 546 74.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 5.8e-226 787.7 519 79.6
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 8.4e-225 783.9 535 73.8
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.9e-224 782.7 522 73.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.2e-224 781.9 525 75.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.1e-223 779.2 555 72.4
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 3.5e-223 778.5 555 73.0
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.8e-222 776.2 555 73.0
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 3.0e-222 775.4 561 72.4
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 3.9e-222 775.0 572 70.6
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 5.1e-222 774.6 513 74.7
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.9e-221 772.7 512 74.6
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.9e-221 772.7 561 72.0
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.3e-221 771.9 535 74.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 9.6e-221 770.4 538 73.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.7e-220 768.5 516 73.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.4e-219 766.5 550 73.8
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.4e-219 765.8 516 73.3
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 6.9e-219 764.2 571 69.7
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.2e-218 763.5 513 74.1
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.2e-218 763.5 528 73.5
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.5e-218 763.1 526 73.4
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.5e-218 763.1 515 73.2
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.0e-218 762.7 511 75.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.0e-218 762.7 567 69.7
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.4e-218 761.9 558 69.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 5.8e-218 761.1 515 74.4
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 5.8e-218 761.1 533 72.8
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 7.6e-218 760.8 549 69.9
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.3e-217 760.0 545 71.0
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.2e-217 759.2 561 70.1
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 6.4e-217 757.7 522 72.4
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.4e-216 756.5 523 71.9
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.9e-216 756.1 527 72.5
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.2e-216 755.4 566 69.1
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.2e-216 755.4 555 70.1
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 4.2e-216 755.0 452 81.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.1e-215 752.7 522 70.5
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.1e-215 752.7 549 69.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 3.5e-215 751.9 514 72.6
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.3e-214 750.0 443 81.5
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.8e-214 749.6 571 68.0
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 6.7e-214 747.7 532 71.4
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 8.7e-214 747.3 564 68.4
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.5e-213 746.5 514 71.8
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.5e-213 746.5 506 73.7
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.3e-213 745.3 546 71.4
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.3e-213 745.3 547 68.4
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.3e-213 745.0 524 71.0
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 7.4e-213 744.2 495 74.9
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.3e-212 743.4 513 72.1
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.3e-212 743.4 547 69.3
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.8e-212 742.3 502 73.3
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 3.7e-212 741.9 513 71.9
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 8.2e-212 740.7 566 68.6
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.1e-211 740.3 513 71.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.4e-211 739.2 495 73.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 4.0e-211 738.4 562 67.8
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.3e-211 738.0 537 70.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.2e-210 736.9 526 70.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.2e-210 736.9 454 79.1
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.6e-210 735.7 490 74.1
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.0e-209 733.8 566 67.7
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.3e-209 733.4 559 68.2
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 8.4e-209 730.7 518 71.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 8.4e-209 730.7 495 73.3
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.6e-207 726.5 576 66.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 7.9e-207 724.2 484 73.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 5.7e-205 718.0 529 70.1
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.4e-203 713.4 430 79.8
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.4e-203 713.4 543 69.2
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 5.3e-203 711.4 452 76.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.2e-202 710.3 517 70.4
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.3e-201 706.8 515 69.7
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.5e-201 704.5 575 64.7
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.3e-188 663.7 374 86.1
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 5.3e-187 658.3 518 67.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.2e-176 622.1 412 74.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.2e-176 621.3 540 59.8
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.2e-173 614.0 386 82.1
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.7e-156 557.0 386 74.4
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 4.1e-155 552.4 440 60.5
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 3.9e-153 545.8 528 54.5
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.1e-147 527.7 422 66.6
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 3.0e-145 519.6 437 58.1
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.1e-139 501.1 441 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 3.8e-116 422.9 496 47.8
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 4.9e-116 422.5 540 48.7
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.6e-111 407.5 534 48.5
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.1e-110 403.3 561 43.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.5e-109 401.0 463 51.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.5e-109 401.0 535 47.5
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-106 391.3 553 47.6
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.3e-105 387.9 519 46.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 6.2e-103 379.0 477 44.7
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.9e-102 375.6 542 46.9
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.0e-100 371.7 255 73.3
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 6.1e-82 309.3 176 83.0
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 7.9e-82 308.9 511 37.8
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.8e-73 281.2 169 78.1
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.6e-50 204.9 218 56.4
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.1e-46 192.2 162 62.3
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.3e-39 168.7 138 63.8
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.1e-38 163.7 131 65.6
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 5.6e-35 153.3 88 87.5
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 7.0e-30 136.3 146 60.3
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 7.3e-27 126.3 105 61.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 9.8e-24 115.9 141 44.7
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 2.4e-22 111.3 104 62.5
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 2.1e-21 108.2 140 54.3
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.6e-20 102.8 59 84.7
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.4e-14 84.7 109 47.7
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.9e-11 75.1 127 41.7
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.5e-11 74.7 143 40.6
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.7e-07 62.0 38 76.3


User provided reference genes

Program Settings