Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.0e-188 663.3 748 100.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-97 361.7 730 58.6
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-91 339.7 217 83.9
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-89 334.0 792 75.0
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-74 284.6 740 79.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-74 284.6 740 79.2
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.2e-69 266.5 206 74.3
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.2e-66 258.5 204 69.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.1e-65 256.1 207 68.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.3e-65 253.1 196 71.4
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-64 251.9 171 81.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.3e-61 242.7 208 63.5
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 8.2e-61 240.0 215 61.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.4e-60 238.4 230 58.3
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.1e-60 237.7 231 59.3
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.3e-60 237.3 202 65.8
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 9.0e-60 236.5 208 63.0
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 5.9e-59 233.8 211 61.6
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.2e-58 231.9 213 62.4
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-57 229.6 118 95.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.9e-57 228.8 189 65.6
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 3.2e-57 228.0 200 64.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 4.2e-57 227.6 212 60.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.2e-56 226.1 205 61.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 2.7e-56 224.9 204 60.8
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 4.6e-56 224.2 202 63.4
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.0e-55 223.0 203 60.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 8.8e-55 219.9 222 55.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.3e-54 218.0 189 63.0
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.7e-53 215.7 204 58.8
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 2.2e-53 215.3 199 62.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 4.8e-53 214.2 253 51.8
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 8.2e-53 213.4 202 57.9
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 8.2e-53 213.4 210 59.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-52 212.6 135 83.7
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 5.3e-52 210.7 213 55.9
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 6.9e-52 210.3 180 63.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 6.9e-52 210.3 180 63.3
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.2e-51 209.5 206 57.3
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.0e-51 208.8 202 57.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.5e-51 207.6 200 58.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.5e-51 207.6 202 57.4
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-50 206.5 200 58.0
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.7e-50 205.7 198 58.6
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.7e-50 205.7 182 62.6
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 3.8e-50 204.5 179 64.8
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 5.0e-50 204.1 205 56.1
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 6.5e-50 203.8 196 58.2
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 8.5e-50 203.4 153 67.3
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-49 203.0 201 56.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.1e-49 203.0 200 56.0
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.5e-49 200.7 200 56.0
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 9.4e-49 199.9 194 60.8
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 9.4e-49 199.9 200 57.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 9.4e-49 199.9 204 56.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 9.4e-49 199.9 204 55.4
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.2e-48 199.5 200 58.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 4.7e-48 197.6 155 66.5
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 6.1e-48 197.2 203 57.1
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 6.1e-48 197.2 210 54.8
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-47 195.7 205 56.6
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.8e-47 195.7 155 66.5
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 3.9e-47 194.5 202 56.4
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 6.7e-47 193.7 198 53.5
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 6.7e-47 193.7 209 55.0
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-46 193.0 201 57.2
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.5e-46 192.6 156 66.7
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 7.4e-46 190.3 213 52.1
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 7.4e-46 190.3 199 55.8
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 9.7e-46 189.9 196 55.1
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.3e-45 189.5 209 54.1
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.8e-45 188.3 156 64.7
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.7e-45 188.0 200 53.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 3.1e-44 184.9 200 54.5
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 9.1e-44 183.3 195 54.4
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.5e-43 182.6 208 51.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 4.5e-43 181.0 156 65.4
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.7e-43 180.3 208 52.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.0e-42 179.9 211 50.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.8e-42 177.9 209 49.3
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-41 175.3 209 51.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.6e-40 171.4 187 51.3
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 6.1e-40 170.6 203 47.8
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.8e-39 169.1 155 56.8
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 8.8e-39 166.8 124 61.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.1e-38 166.4 209 49.8
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.1e-38 166.4 155 59.4
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.1e-38 166.4 209 48.3
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.8e-37 161.8 229 47.6
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.4e-36 158.7 139 61.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.0e-35 155.6 155 56.8
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.3e-34 152.9 169 55.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 3.8e-34 151.4 163 52.8
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.5e-33 148.7 164 56.1
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 3.2e-33 148.3 128 61.7
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 4.2e-33 147.9 131 62.6
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 9.4e-33 146.7 166 57.2
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 2.1e-32 145.6 165 55.8
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 6.1e-32 144.1 179 49.7
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.0e-31 143.3 160 53.1
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.4e-31 142.9 177 49.7
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.4e-31 142.9 177 49.7
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.4e-31 142.9 151 57.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-31 142.5 158 55.1
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 2.3e-31 142.1 150 55.3
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 6.7e-31 140.6 126 57.9
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.2e-30 139.8 120 64.2
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 3.1e-28 131.7 163 47.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.2e-27 129.8 162 46.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.9e-27 127.5 163 49.1
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 7.7e-27 127.1 163 48.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 6.5e-26 124.0 143 51.7
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.1e-25 123.2 116 60.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.5e-25 122.1 119 52.9
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.6e-24 118.2 118 50.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.4e-23 116.3 117 50.4
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 8.8e-23 113.6 107 57.9
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.2e-22 113.2 130 44.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.2e-22 113.2 100 50.0
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.5e-22 112.8 96 55.2
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 5.7e-22 110.9 97 52.6
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.4e-20 106.3 168 41.7
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.8e-20 105.9 100 51.0
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.0e-19 102.4 170 34.7
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.0e-19 102.4 97 52.6
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.0e-18 100.1 229 36.2
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 4.0e-15 88.2 118 43.2
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.6e-11 76.3 115 44.3
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 2.9e-10 72.0 85 43.5
FAN18G3877 Fragaria x ananassa HOM05D003039 ORTHO05D009478 7.5e-06 57.4 92 30.4


User provided reference genes

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