Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 9.2e-262 906.4 462 100.0
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 4.6e-261 904.0 462 99.8
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 2.1e-165 586.3 459 67.5
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 3.2e-161 572.4 463 62.2
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 4.6e-160 568.5 460 64.6
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 5.0e-159 565.1 463 62.4
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 6.6e-159 564.7 453 63.6
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 7.3e-158 561.2 455 64.4
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 5.2e-156 555.1 413 70.7
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 2.2e-154 549.7 452 61.1
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.2e-153 545.8 458 61.6
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.0e-151 540.8 458 61.6
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 3.0e-151 539.3 461 60.5
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 6.6e-151 538.1 461 60.1
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 1.5e-147 526.9 458 59.8
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 2.6e-147 526.2 449 61.7
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 3.4e-147 525.8 413 68.0
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 2.2e-146 523.1 460 59.3
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 2.9e-146 522.7 471 59.4
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.2e-144 517.3 404 68.6
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 1.3e-143 513.8 474 57.6
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 6.6e-143 511.5 470 58.3
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 1.5e-142 510.4 474 56.8
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 1.6e-141 506.9 464 58.2
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.1e-140 504.2 450 59.1
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 5.2e-140 501.9 471 58.0
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 5.2e-140 501.9 460 57.2
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 6.8e-140 501.5 414 65.5
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 6.8e-140 501.5 466 56.7
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 5.8e-139 498.4 471 55.6
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 4.9e-138 495.4 471 54.8
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 1.2e-136 490.7 462 55.2
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 1.0e-135 487.6 459 55.6
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 2.3e-135 486.5 461 56.6
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 5.1e-135 485.3 472 56.1
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 8.6e-135 484.6 467 55.2
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 4.3e-134 482.3 462 56.9
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 2.8e-133 479.6 485 53.6
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 3.6e-133 479.2 461 56.0
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 1.1e-132 477.6 458 56.1
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 3.1e-132 476.1 459 55.6
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 8.9e-132 474.6 454 55.9
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.2e-131 474.2 453 56.5
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.2e-131 474.2 453 56.5
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.2e-131 474.2 453 56.5
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.5e-131 473.8 451 54.3
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 2.0e-131 473.4 454 55.5
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 9.9e-131 471.1 450 56.9
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 1.3e-130 470.7 450 56.4
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 4.9e-130 468.8 453 55.4
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 6.4e-130 468.4 453 55.6
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 1.9e-129 466.8 471 55.2
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 9.3e-129 464.5 480 54.4
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.5e-128 462.6 474 53.6
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 7.8e-128 461.5 453 54.3
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 1.3e-127 460.7 463 55.3
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.6e-127 458.4 472 53.4
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 2.5e-126 456.4 358 66.5
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 8.1e-125 451.4 469 52.2
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 1.4e-124 450.7 459 54.2
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 3.1e-124 449.5 469 54.4
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.3e-124 448.7 461 53.6
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 2.0e-123 446.8 469 53.1
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 1.3e-122 444.1 466 50.9
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 3.8e-122 442.6 470 53.6
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.4e-121 440.7 462 52.8
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 3.2e-121 439.5 463 52.9
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 4.2e-121 439.1 466 50.6
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.2e-120 437.6 462 52.4
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 1.2e-120 437.6 473 52.9
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.6e-120 437.2 465 52.7
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.0e-119 434.5 449 53.7
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.3e-119 434.1 409 54.0
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 2.3e-119 433.3 463 49.9
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.1e-119 432.2 454 53.1
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 2.1e-117 426.8 475 51.6
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.9e-111 406.0 426 52.8
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 4.3e-110 402.5 467 48.8
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 4.8e-109 399.1 457 46.8
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.8e-108 397.1 445 50.3
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.0e-106 391.3 422 50.2
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.2e-106 390.2 404 53.0
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 8.4e-106 388.3 441 50.3
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 1.2e-104 384.4 396 54.0
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.0e-90 335.9 376 49.7
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.6e-88 330.9 434 44.5
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 3.6e-88 329.7 595 36.1
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 3.1e-84 316.6 462 42.0
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.3e-84 315.8 331 51.7
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.0e-82 311.6 236 62.3
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 1.1e-81 308.1 236 64.4
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 1.2e-67 261.5 261 51.0
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 3.0e-63 246.9 323 46.7
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.5e-62 244.6 455 36.9
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 9.8e-62 241.9 530 34.3
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.1e-60 238.4 145 77.9
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 1.6e-59 234.6 255 49.8
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 3.2e-57 226.9 312 44.2
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.2e-46 191.8 460 30.2
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 7.3e-41 172.6 512 27.7
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 2.0e-35 154.5 454 30.8
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 1.7e-34 151.4 450 29.8
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 2.5e-33 147.5 120 62.5
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 2.3e-31 141.0 151 55.6
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.5e-30 138.3 180 43.9
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.6e-30 137.5 245 40.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.3e-29 135.2 455 29.5
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 8.3e-29 132.5 128 57.8
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 7.8e-27 125.9 248 37.5
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 8.9e-23 112.5 97 68.0
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 1.4e-20 105.1 93 58.1
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 5.2e-15 86.7 178 33.7
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.2e-13 81.3 102 50.0
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 2.2e-13 81.3 120 33.3
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 8.7e-10 69.3 124 30.6
VMungo0331G1316 Vigna mungo HOM05D006594 ORTHO05D008383 2.0e-06 58.2 80 41.2
VMungo1215G0888 Vigna mungo HOM05D006594 ORTHO05D008383 7.6e-06 56.2 45 57.8


User provided reference genes

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