Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.5e-236 821.2 420 100.0
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.8e-235 818.9 420 99.8
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.6e-202 708.8 408 85.8
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 4.4e-194 681.4 418 79.4
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 4.8e-193 677.9 415 79.8
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.8e-193 677.9 417 81.1
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 1.1e-192 676.8 416 79.1
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 7.0e-192 674.1 440 78.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 1.2e-191 673.3 415 79.0
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.6e-191 672.9 415 78.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 3.5e-191 671.8 415 81.7
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 4.5e-191 671.4 427 79.2
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 7.7e-191 670.6 419 81.4
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 5.0e-190 667.9 412 80.3
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 6.5e-190 667.5 418 78.9
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 2.5e-189 665.6 421 80.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 3.2e-189 665.2 426 77.0
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 6.1e-188 661.0 418 78.5
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-187 659.8 418 78.2
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.3e-187 659.1 418 78.5
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 2.3e-187 659.1 461 74.4
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 3.0e-187 658.7 416 78.8
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 8.8e-187 657.1 424 77.6
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 2.0e-186 656.0 420 78.3
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 3.4e-186 655.2 415 77.1
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 7.5e-186 654.1 408 79.9
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.8e-185 652.1 420 77.4
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.8e-185 652.1 420 78.1
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 3.7e-185 651.7 418 77.8
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 3.7e-185 651.7 418 77.0
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 3.7e-185 651.7 421 77.9
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 9.2e-184 647.1 421 77.0
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.6e-183 646.4 408 78.7
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 2.9e-182 642.1 418 76.3
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 6.6e-182 641.0 414 76.1
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 6.6e-182 641.0 421 77.0
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 6.6e-182 641.0 455 72.5
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 6.6e-182 641.0 462 70.8
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 1.6e-180 636.3 410 77.1
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.6e-180 635.2 419 77.1
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 6.1e-180 634.4 421 76.2
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.4e-179 633.3 407 78.1
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-179 632.9 461 71.4
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 5.2e-179 631.3 410 77.1
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 7.5e-178 627.5 420 74.8
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.7e-177 626.3 413 75.8
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 2.2e-177 625.9 414 75.6
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 3.7e-177 625.2 420 74.8
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 1.6e-175 619.8 413 74.8
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.0e-175 619.4 416 73.8
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 2.0e-175 619.4 420 76.2
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.0e-174 617.1 412 74.8
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 3.3e-173 612.1 413 73.6
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 9.5e-173 610.5 420 72.9
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 1.6e-172 609.8 415 73.5
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 4.7e-172 608.2 416 71.2
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 8.0e-172 607.4 412 74.0
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 8.9e-171 604.0 405 74.6
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 8.9e-171 604.0 416 71.2
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 2.0e-170 602.8 414 72.9
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 3.4e-170 602.1 416 71.4
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 7.5e-170 600.9 413 71.2
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 4.9e-169 598.2 422 70.4
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 6.4e-169 597.8 416 69.7
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 1.1e-168 597.0 419 73.3
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.9e-168 596.3 416 70.4
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.4e-168 595.9 416 70.4
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 2.3e-166 589.3 420 72.1
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.1e-165 587.0 487 64.5
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-165 586.6 448 68.8
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 2.8e-164 582.4 445 66.1
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 3.6e-164 582.0 346 85.3
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.7e-164 581.6 445 65.4
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 6.2e-164 581.3 445 65.4
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 6.8e-163 577.8 420 70.7
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.5e-162 576.6 417 69.1
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-162 576.6 446 69.3
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.9e-161 572.4 416 68.3
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 7.1e-160 567.8 420 69.5
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.3e-158 563.5 408 70.3
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.5e-157 560.1 408 69.9
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 6.2e-156 554.7 443 65.2
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 4.0e-155 552.0 382 72.8
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 8.9e-155 550.8 408 68.6
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.2e-154 550.4 329 82.7
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 5.8e-154 548.1 457 60.4
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 2.1e-151 539.7 421 67.7
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.0e-150 535.8 414 67.1
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.9e-149 533.1 422 64.0
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.9e-149 533.1 412 62.4
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 3.3e-149 532.3 443 62.5
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 1.7e-145 520.0 360 71.1
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 6.4e-145 518.1 426 62.7
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.9e-142 508.8 412 61.7
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 4.3e-141 505.4 421 66.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 5.6e-141 505.0 308 83.8
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 2.8e-140 502.7 471 59.2
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.9e-139 498.0 287 86.4
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.2e-127 460.7 313 76.7
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 3.5e-127 459.1 410 58.3
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 8.8e-110 401.4 264 75.8
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.5e-109 400.6 285 69.8
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 5.5e-104 382.1 215 88.8
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 1.8e-102 377.1 421 49.4
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.1e-101 374.4 418 50.5
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 2.6e-101 373.2 396 51.0
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 9.7e-101 371.3 263 71.1
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 8.2e-100 368.2 224 82.6
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.2e-97 360.1 238 76.5
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.1e-91 341.3 318 58.8
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 9.4e-88 328.2 242 67.4
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.1e-87 327.0 358 54.2
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 2.7e-82 310.1 314 53.5
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 4.5e-82 309.3 370 48.6
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.6e-79 299.7 252 60.7
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 6.8e-70 268.9 225 62.2
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.5e-64 250.4 137 86.9
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.0e-62 243.0 166 74.1
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 2.2e-60 237.3 149 77.9
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 1.7e-57 227.6 402 36.8
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 6.8e-54 215.7 154 70.1
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.9e-52 210.3 179 58.7
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.9e-51 207.6 125 81.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 7.3e-48 195.7 404 34.4
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.6e-41 172.6 157 61.8
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 3.1e-38 163.7 101 75.2
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 3.1e-38 163.7 306 36.3
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.7e-33 147.9 107 72.0
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.6e-31 141.4 87 80.5
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 3.2e-27 127.1 101 64.4
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.1e-22 112.1 117 59.0
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.2e-21 108.6 366 27.9
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.8e-20 103.6 95 53.7
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 1.4e-19 101.7 218 32.1
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.9e-19 101.3 79 65.8
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.5e-18 97.1 65 72.3
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 4.8e-15 86.7 54 77.8


User provided reference genes

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