Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 0.0e+00 1434.9 726 100.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 0.0e+00 1139.0 702 79.5
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 0.0e+00 1084.3 705 75.5
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.0e-312 1073.9 704 76.1
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.0e-295 1018.8 702 71.7
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.4e-293 1012.7 702 71.1
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 3.5e-292 1008.1 698 70.5
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.9e-285 985.7 618 77.5
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 2.5e-285 985.3 700 69.7
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 3.9e-283 978.0 695 69.5
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 6.7e-283 977.2 700 69.7
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.5e-282 976.1 701 69.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.9e-282 975.7 699 69.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.8e-281 971.1 702 67.8
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.0e-278 963.4 701 67.6
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.6e-276 956.1 705 66.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.1e-276 955.7 702 66.7
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.5e-276 954.9 696 68.1
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 8.2e-273 943.7 703 67.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.4e-272 942.2 703 66.9
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 3.1e-272 941.8 702 68.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.5e-271 939.5 705 66.7
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-270 936.4 698 65.8
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 3.8e-270 934.9 703 67.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 6.5e-270 934.1 701 65.3
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.5e-270 934.1 702 65.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.2e-269 931.8 701 65.8
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.2e-269 931.8 761 61.8
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 9.4e-269 930.2 698 65.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.2e-268 929.9 703 65.6
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.4e-267 926.4 693 66.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.8e-265 918.7 662 68.6
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 6.3e-265 917.5 693 64.8
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.1e-264 916.8 700 63.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.1e-264 916.8 700 64.4
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.4e-264 916.4 703 65.0
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.4e-264 916.4 699 64.5
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.8e-264 916.0 702 65.2
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.1e-264 914.8 691 65.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.6e-263 912.1 754 61.5
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.9e-262 908.7 694 65.0
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.9e-262 908.7 698 64.5
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 6.5e-262 907.5 692 64.9
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 9.4e-261 903.7 702 64.7
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.6e-260 901.7 701 64.2
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.0e-259 900.2 694 64.7
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 5.1e-259 897.9 692 64.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 6.7e-259 897.5 695 64.5
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 6.7e-259 897.5 665 64.7
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.3e-258 895.2 702 64.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.4e-258 894.8 690 64.3
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.7e-257 892.9 702 63.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.8e-257 892.1 698 63.8
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 4.8e-257 891.3 690 63.9
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.4e-256 889.0 693 63.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.6e-255 885.6 694 63.5
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.3e-254 883.2 697 63.8
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.9e-254 882.1 704 61.6
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.0e-254 881.3 702 62.0
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.0e-251 873.6 704 60.9
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.5e-250 869.8 694 62.5
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.5e-247 858.6 693 61.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.8e-246 855.1 709 60.9
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 5.0e-246 854.7 698 61.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 5.5e-245 851.3 694 62.1
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.0e-242 842.8 716 61.2
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 9.8e-242 840.5 694 60.7
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 2.8e-241 839.0 575 70.4
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 4.8e-241 838.2 693 60.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 4.8e-241 838.2 694 60.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.1e-240 837.0 694 60.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.1e-240 835.1 667 62.1
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 4.5e-239 831.6 694 60.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.0e-238 830.5 696 60.2
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.2e-238 829.3 700 59.7
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.9e-237 826.2 680 60.4
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 8.0e-236 820.8 694 60.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.5e-234 816.6 678 60.5
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 5.7e-234 814.7 704 58.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 9.8e-234 813.9 693 59.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.7e-233 813.1 695 59.1
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 2.8e-233 812.4 633 63.8
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.8e-232 809.7 695 58.8
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 3.1e-232 808.9 693 58.7
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.1e-229 800.4 648 62.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.7e-225 786.6 686 59.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.2e-218 763.8 699 55.1
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.2e-217 759.6 706 52.4
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 9.2e-216 754.2 694 55.5
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 7.3e-213 744.6 710 52.0
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.9e-206 722.2 549 65.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 7.3e-205 718.0 641 60.4
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.6e-199 698.7 701 53.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.2e-193 679.9 711 48.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.9e-193 679.5 680 53.2
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 2.9e-193 679.5 703 50.1
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.5e-181 640.6 577 58.4
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.6e-170 601.7 473 61.5
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 4.1e-147 526.2 364 69.0
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 6.5e-145 518.8 358 70.1
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.8e-139 500.7 482 54.6
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 4.1e-139 499.6 421 61.0
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.4e-131 474.6 711 38.0
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.4e-131 473.8 676 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 5.0e-121 439.5 613 41.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.5e-120 437.2 691 36.6
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.5e-117 427.9 626 42.0
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.7e-116 424.5 665 37.6
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.4e-110 404.8 344 58.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.9e-110 402.1 769 34.2
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.1e-107 393.3 760 33.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.4e-99 366.3 284 65.8
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.0e-89 334.0 339 54.3
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.9e-67 261.5 564 32.6
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 7.6e-61 239.6 189 61.9
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 8.4e-60 236.1 176 66.5
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.3e-56 224.2 345 38.3
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.7e-55 220.7 133 78.2
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.8e-54 218.4 167 62.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.0e-53 214.9 134 75.4
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.7e-40 170.2 468 29.1
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.1e-34 150.2 125 59.2
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.9e-34 149.8 128 50.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 7.4e-24 116.7 88 54.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 7.0e-22 110.2 75 65.3
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.5e-19 102.4 79 59.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.2e-19 100.9 79 58.2
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.8e-14 85.5 407 24.3
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.5e-13 81.3 75 53.3
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.0e-12 77.4 104 47.1
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 3.4e-08 64.7 130 35.4
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.2e-07 62.0 60 55.0
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.3e-07 60.1 47 61.7
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.1e-06 57.8 47 59.6


User provided reference genes

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