Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002061 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D004163 1.4e-48 196.1 102 100.0
CSS0008374 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D004163 1.9e-18 95.9 94 61.7
Lalb_Chr22g0354841 Lupinus albus HOM05D001326 ORTHO05D004163 2.4e-13 79.0 96 49.0
Lj1g0010090 Lotus japonicus HOM05D001326 ORTHO05D004163 9.2e-13 77.0 63 60.3
TAR625G0613 Trochodendron aralioides HOM05D001326 ORTHO05D004163 9.2e-13 77.0 61 62.3
Glyma.14G086900 Glycine max HOM05D001326 ORTHO05D004163 1.6e-12 76.3 89 51.7
TAR381G1295 Trochodendron aralioides HOM05D001326 ORTHO05D004163 1.6e-12 76.3 65 60.0
Phvul.001G025400 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 2.7e-12 75.5 93 49.5
Glyma.06G043700 Glycine max HOM05D001326 ORTHO05D004163 4.6e-12 74.7 62 59.7
Lalb_Chr14g0368421 Lupinus albus HOM05D001326 ORTHO05D004163 4.6e-12 74.7 92 46.7
Manes.18G042600 Manihot esculenta HOM05D001326 ORTHO05D004163 4.6e-12 74.7 60 60.0
Actinidia08267 Actinidia chinensis HOM05D001326 ORTHO05D004163 6.0e-12 74.3 62 59.7
Hma1.2p1_0634F.1_g192950 Hydrangea macrophylla HOM05D001326 ORTHO05D004163 7.8e-12 73.9 94 50.0
Glyma.04G043200 Glycine max HOM05D001326 ORTHO05D004163 1.0e-11 73.6 62 58.1
Peaxi162Scf00219g00123 Petunia axillaris HOM05D001326 ORTHO05D004163 1.0e-11 73.6 61 57.4
Cc10_g05200 Coffea canephora HOM05D001326 ORTHO05D004163 1.3e-11 73.2 63 57.1
Lj4P764T7 Lonicera japonica HOM05D001326 ORTHO05D004163 1.7e-11 72.8 59 59.3
Ca_13253_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 2.3e-11 72.4 59 57.6
Glyma.17G237500 Glycine max HOM05D001326 ORTHO05D004163 2.3e-11 72.4 95 49.5
PSO541G2388 Papaver somniferum HOM05D001326 ORTHO05D004163 3.0e-11 72.0 55 61.8
PSO675G1014 Papaver somniferum HOM05D001326 ORTHO05D004163 3.0e-11 72.0 55 61.8
AUR62044632 Chenopodium quinoa HOM05D001326 ORTHO05D004163 5.0e-11 71.2 59 59.3
Haze_18087 Corylus avellana HOM05D001326 ORTHO05D004163 5.0e-11 71.2 63 54.0
MD15G1075600 Malus domestica HOM05D001326 ORTHO05D004163 5.0e-11 71.2 59 62.7
Phvul.009G068700 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 5.0e-11 71.2 62 56.5
Actinidia38087 Actinidia chinensis HOM05D001326 ORTHO05D004163 6.6e-11 70.9 53 62.3
EL10As7g23801 Beta vulgaris HOM05D001326 ORTHO05D004163 8.6e-11 70.5 61 55.7
CiPaw.15G049900 Carya illinoinensis HOM05D001326 ORTHO05D004163 1.1e-10 70.1 61 55.7
CiPaw.16G035200 Carya illinoinensis HOM05D001326 ORTHO05D004163 1.1e-10 70.1 61 57.4
Dinv39258 Davidia involucrata HOM05D001326 ORTHO05D004163 1.1e-10 70.1 93 49.5
Prupe.1G429000 Prunus persica HOM05D001326 ORTHO05D004163 1.1e-10 70.1 59 61.0
CAN.G1621.9 Capsicum annuum HOM05D001326 ORTHO05D004163 2.5e-10 68.9 94 43.6
Aqoxy6G02840 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 3.3e-10 68.6 65 53.8
MD08G1091600 Malus domestica HOM05D001326 ORTHO05D004163 3.3e-10 68.6 59 61.0
Cfa018037 Carpinus fangiana HOM05D001326 ORTHO05D004163 4.3e-10 68.2 63 50.8
Medtr1g018710 Medicago truncatula HOM05D001326 ORTHO05D004163 4.3e-10 68.2 59 57.6
vmacro23334 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 4.3e-10 68.2 99 43.4
Oeu016580.1 Olea europaea HOM05D001326 ORTHO05D004163 5.6e-10 67.8 62 51.6
Ca_15925_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 7.3e-10 67.4 58 56.9
PGSC0003DMG400003309 Solanum tuberosum HOM05D001326 ORTHO05D004163 7.3e-10 67.4 103 42.7
Actinidia22665 Actinidia chinensis HOM05D001326 ORTHO05D004163 9.5e-10 67.0 56 57.1
Dinv35915 Davidia involucrata HOM05D000232 ORTHO05D004163 9.5e-10 67.0 106 43.4
Nitab4.5_0003035g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 9.5e-10 67.0 92 46.7
Solyc04g078380.3 Solanum lycopersicum HOM05D001326 ORTHO05D004163 9.5e-10 67.0 103 42.7
Sopen04g031970 Solanum pennellii HOM05D001326 ORTHO05D004163 9.5e-10 67.0 103 42.7
MSTRG.25063 Avicennia marina HOM05D001326 ORTHO05D004163 1.2e-09 66.6 59 54.2
Gohir.D05G210000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 1.2e-09 66.6 68 50.0
Gorai.009G216400 Gossypium raimondii HOM05D001326 ORTHO05D004163 1.2e-09 66.6 68 50.0
Lj5g0001031 Lotus japonicus HOM05D001326 ORTHO05D004163 1.2e-09 66.6 61 59.0
Lalb_Chr23g0267351 Lupinus albus HOM05D001326 ORTHO05D004163 1.2e-09 66.6 80 48.8
Rhsim06G0057100 Rhododendron simsii HOM05D001326 ORTHO05D004163 1.2e-09 66.6 94 46.8
Ciclev10002480m.g Citrus clementina HOM05D001326 ORTHO05D004163 1.6e-09 66.2 101 44.6
Migut.N02754 Erythranthe guttata HOM05D001326 ORTHO05D004163 1.6e-09 66.2 58 53.4
CANSAT25G2642 Cannabis sativa HOM05D001326 ORTHO05D004163 2.1e-09 65.9 62 50.0
AUR62044370 Chenopodium quinoa HOM05D001326 ORTHO05D004163 2.1e-09 65.9 110 43.6
Duzib093G0342 Durio zibethinus HOM05D001326 ORTHO05D004163 2.1e-09 65.9 61 52.5
Sc15g0005510 Simmondsia chinensis HOM05D001326 ORTHO05D004163 2.1e-09 65.9 94 46.8
Sc15g0005810 Simmondsia chinensis HOM05D001326 ORTHO05D004163 2.1e-09 65.9 94 46.8
MSTRG.22238 Avicennia marina HOM05D001326 ORTHO05D004163 2.8e-09 65.5 60 53.3
Migut.O00599 Erythranthe guttata HOM05D001326 ORTHO05D004163 2.8e-09 65.5 58 51.7
Psat0s3164g0120 Pisum sativum HOM05D001326 ORTHO05D004163 2.8e-09 65.5 63 49.2
Sed0004426 Sechium edule HOM05D001326 ORTHO05D004163 2.8e-09 65.5 66 51.5
VMungo1309G2681 Vigna mungo HOM05D001326 ORTHO05D004163 2.8e-09 65.5 61 52.5
Atru.chr13.770 Acer truncatum HOM05D001326 ORTHO05D004163 3.6e-09 65.1 103 43.7
BcaC08g42930 Brassica carinata HOM05D001326 ORTHO05D004163 3.6e-09 65.1 64 48.4
C06p01670 Brassica napus HOM05D001326 ORTHO05D004163 3.6e-09 65.1 64 48.4
BolC6t35298H Brassica oleracea HOM05D001326 ORTHO05D004163 3.6e-09 65.1 64 48.4
Nitab4.5_0011741g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 3.6e-09 65.1 92 45.7
Ah.05g167240 Amaranthus hybridus HOM05D001326 ORTHO05D004163 6.2e-09 64.3 69 52.2
COL.COLO4_28576 Corchorus olitorius HOM05D001326 ORTHO05D004163 6.2e-09 64.3 64 48.4
MELO3C016792.2 Cucumis melo HOM05D001326 ORTHO05D004163 6.2e-09 64.3 66 53.0
Nitab4.5_0004888g0020 Nicotiana tabacum HOM05D001326 ORTHO05D004163 6.2e-09 64.3 92 42.4
Potri.002G122000 Populus trichocarpa HOM05D001326 ORTHO05D004163 6.2e-09 64.3 60 53.3
PGR031G2476 Punica granatum HOM05D001326 ORTHO05D004163 6.2e-09 64.3 51 56.9
A10p06640 Brassica napus HOM05D001326 ORTHO05D004163 8.0e-09 63.9 64 46.9
BraA10t42922Z Brassica rapa HOM05D001326 ORTHO05D004163 8.0e-09 63.9 64 46.9
CsaV3_4G034780 Cucumis sativus L. HOM05D001326 ORTHO05D004163 8.0e-09 63.9 66 51.5
Gohir.A05G206500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 8.0e-09 63.9 87 43.7
Sed0018271 Sechium edule HOM05D001326 ORTHO05D004163 8.0e-09 63.9 58 53.4
SGA_v2.0_scaffold28G11812 Striga asiatica HOM05D001326 ORTHO05D004163 8.0e-09 63.9 60 51.7
Thecc.08G095300 Theobroma cacao HOM05D001326 ORTHO05D004163 8.0e-09 63.9 61 50.8
AT5G43070 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 1.1e-08 63.5 61 47.5
CAN.G107.48 Capsicum annuum HOM05D001326 ORTHO05D004163 1.1e-08 63.5 82 45.1
Psat6g014240 Pisum sativum HOM05D001326 ORTHO05D004163 1.1e-08 63.5 59 52.5
SGA_v2.0_scaffold14G06954 Striga asiatica HOM05D001326 ORTHO05D004163 1.1e-08 63.5 60 50.0
unitig_8.g5036 Utricularia gibba HOM05D001326 ORTHO05D004163 1.1e-08 63.5 58 53.4
BcaB07g33854 Brassica carinata HOM05D001326 ORTHO05D004163 1.4e-08 63.2 64 45.3
FAN20G2280 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.4e-08 63.2 62 50.0
TWI09G1274 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 1.4e-08 63.2 60 53.3
AL47U10010 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.8e-08 62.8 61 45.9
AL8G17650 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 1.8e-08 62.8 61 45.9
DCAR_008838 Daucus carota HOM05D001326 ORTHO05D004163 1.8e-08 62.8 60 50.0
Nitab4.5_0000569g0170 Nicotiana tabacum HOM05D001326 ORTHO05D004163 1.8e-08 62.8 92 42.4
ClCG05G020300 Citrullus lanatus HOM05D001326 ORTHO05D004163 2.3e-08 62.4 59 52.5
DCAR_012800 Daucus carota HOM05D001326 ORTHO05D004163 2.3e-08 62.4 51 60.8
Medtr3g102500 Medicago truncatula HOM05D001326 ORTHO05D004163 2.3e-08 62.4 58 53.4
FAN15G1104 Fragaria x ananassa HOM05D001326 ORTHO05D004163 3.1e-08 62.0 62 50.0
SalBow6G1031 Salvia bowleyana HOM05D001326 ORTHO05D004163 3.1e-08 62.0 59 50.8
HPP92_007849 Vanilla planifolia HOM05D001326 ORTHO05D004163 3.1e-08 62.0 100 40.0
VMungo0647G1866 Vigna mungo HOM05D001326 ORTHO05D004163 3.1e-08 62.0 94 45.7
ClCG08G016240 Citrullus lanatus HOM05D001326 ORTHO05D004163 4.0e-08 61.6 102 41.2
TWI36G1533 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 4.0e-08 61.6 59 52.5
Lsat_1_v5_gn_1_23021 Lactuca sativa HOM05D001326 ORTHO05D004163 5.2e-08 61.2 96 41.7
Lsat_1_v5_gn_6_109441 Lactuca sativa HOM05D001326 ORTHO05D004163 5.2e-08 61.2 63 52.4
Potri.014G021900 Populus trichocarpa HOM05D001326 ORTHO05D004163 5.2e-08 61.2 56 53.6
Sp2g07850 Schrenkiella parvula HOM05D001326 ORTHO05D004163 5.2e-08 61.2 64 43.8
THA.LOC104820501 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 5.2e-08 61.2 88 39.8
TPR.G25586 Trifolium pratense HOM05D001326 ORTHO05D004163 5.2e-08 61.2 58 51.7
vmacro23170 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 5.2e-08 61.2 110 40.0
HPP92_004637 Vanilla planifolia HOM05D001326 ORTHO05D004163 5.2e-08 61.2 58 50.0
AL1G53320 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 6.8e-08 60.8 61 47.5
Oeu036969.1 Olea europaea HOM05D001326 ORTHO05D004163 6.8e-08 60.8 97 41.2
BcaB04g17546 Brassica carinata HOM05D001326 ORTHO05D004163 8.9e-08 60.5 62 46.8
FAN27G3472 Fragaria x ananassa HOM05D001326 ORTHO05D004163 8.9e-08 60.5 62 48.4
Cpa.g.sc21.138 Carica papaya HOM05D001326 ORTHO05D004163 1.2e-07 60.1 64 48.4
Thhalv10011812m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 1.2e-07 60.1 60 46.7
Sed0026094 Sechium edule HOM05D001326 ORTHO05D004163 1.2e-07 60.1 94 42.6
FvH4_2g33670 Fragaria vesca HOM05D001326 ORTHO05D004163 1.5e-07 59.7 62 48.4
FAN24G1427 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.5e-07 59.7 62 48.4
Gohir.A01G121500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 1.5e-07 59.7 85 42.4
THA.LOC104814178 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.5e-07 59.7 65 43.1
Sabra14G0014500 Salix brachista HOM05D001326 ORTHO05D004163 2.0e-07 59.3 66 48.5
Aqoxy5G01135 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 2.6e-07 58.9 108 39.8
AT1G47200 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 2.6e-07 58.9 61 45.9
QL02p003371 Quercus lobata HOM05D001326 ORTHO05D004163 2.6e-07 58.9 113 32.7
Duzib041G0056 Durio zibethinus HOM05D001326 ORTHO05D004163 3.4e-07 58.5 84 41.7
RcHm_v2.0_Chr6g0308881 Rosa chinensis HOM05D001326 ORTHO05D004163 4.4e-07 58.2 59 47.5
Sp1g34320 Schrenkiella parvula HOM05D001326 ORTHO05D004163 4.4e-07 58.2 63 42.9
A08p05940 Brassica napus HOM05D001326 ORTHO05D004163 5.8e-07 57.8 62 43.5
BraA08t32595Z Brassica rapa HOM05D001326 ORTHO05D004163 5.8e-07 57.8 62 43.5
CARHR036740 Cardamine hirsuta HOM05D001326 ORTHO05D004163 5.8e-07 57.8 61 44.3
MELO3C010830.2 Cucumis melo HOM05D001326 ORTHO05D004163 5.8e-07 57.8 58 48.3
Gohir.D01G109000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 5.8e-07 57.8 85 41.2
Gorai.002G133200 Gossypium raimondii HOM05D001326 ORTHO05D004163 5.8e-07 57.8 85 41.2
ECA246G0756 Erigeron canadensis HOM05D001326 ORTHO05D004163 7.5e-07 57.4 63 44.4
HanXRQChr05g0150481 Helianthus annuus HOM05D001326 ORTHO05D004163 7.5e-07 57.4 59 52.5
Nn1g04667 Nelumbo nucifera HOM05D001326 ORTHO05D004163 7.5e-07 57.4 79 41.8
unitig_26.g9808 Utricularia gibba HOM05D001326 ORTHO05D004163 9.8e-07 57.0 59 49.2
BcaC07g37236 Brassica carinata HOM05D001326 ORTHO05D004163 1.3e-06 56.6 109 33.9
C08p06600 Brassica napus HOM05D001326 ORTHO05D004163 1.3e-06 56.6 109 33.9
BolC8t47503H Brassica oleracea HOM05D001326 ORTHO05D004163 1.3e-06 56.6 109 33.9
ATR0205G017 Amborella trichopoda HOM05D001326 ORTHO05D004163 1.7e-06 56.2 91 39.6
CARHR180920 Cardamine hirsuta HOM05D001326 ORTHO05D004163 1.7e-06 56.2 110 33.6
SEGI_33127 Sequoiadendron giganteum HOM05D001326 ORTHO05D004163 1.7e-06 56.2 59 47.5
Aa31LG5G18920 Aethionema arabicum HOM05D001326 ORTHO05D004163 2.9e-06 55.5 85 44.7
MBI16_g04493_MAGBIO Magnolia biondii HOM05D001326 ORTHO05D004163 2.9e-06 55.5 38 65.8
HPP92_023698 Vanilla planifolia HOM05D001326 ORTHO05D004163 2.9e-06 55.5 77 36.4
Carub.0001s3596 Capsella rubella HOM05D001326 ORTHO05D004163 3.7e-06 55.1 99 39.4
CsaV3_2G026380 Cucumis sativus L. HOM05D001326 ORTHO05D004163 3.7e-06 55.1 102 39.2
Thhalv10003281m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 3.7e-06 55.1 61 45.9


User provided reference genes

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