Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.1e-105 386.7 209 100.0
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.6e-102 375.6 209 97.6
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 1.4e-84 316.6 208 79.8
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 3.5e-83 312.0 208 79.8
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 4.5e-83 311.6 210 79.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 2.9e-82 308.9 209 79.9
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 3.8e-82 308.5 209 77.5
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 5.0e-82 308.1 209 78.5
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.9e-81 306.2 169 97.0
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 7.2e-81 304.3 209 75.6
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.2e-80 303.5 209 77.5
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 3.6e-80 302.0 203 78.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 1.4e-79 300.1 209 77.5
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 2.3e-79 299.3 211 76.8
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 2.3e-79 299.3 209 76.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 3.0e-79 298.9 211 76.8
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 6.8e-79 297.7 209 76.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.2e-78 297.0 200 79.0
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 2.0e-78 296.2 209 77.5
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 2.6e-78 295.8 209 77.5
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.8e-77 292.4 209 76.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 2.8e-77 292.4 209 74.6
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 3.7e-77 292.0 212 75.5
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 4.9e-77 291.6 210 76.2
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 4.9e-77 291.6 209 77.0
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 4.9e-77 291.6 209 77.5
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 6.3e-77 291.2 212 74.1
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 6.3e-77 291.2 209 73.7
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 8.3e-77 290.8 206 75.7
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 3.1e-76 288.9 207 75.4
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 5.4e-76 288.1 207 74.9
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 1.2e-75 287.0 207 75.4
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 1.6e-75 286.6 207 75.4
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 2.0e-75 286.2 209 75.1
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 2.7e-75 285.8 206 74.8
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 5.9e-75 284.6 209 72.7
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.7e-74 283.1 206 73.3
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 2.9e-74 282.3 206 74.3
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 6.6e-74 281.2 210 73.8
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 1.1e-73 280.4 209 73.7
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.2e-72 276.9 209 69.9
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 3.6e-72 275.4 212 71.7
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 1.8e-71 273.1 207 71.5
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 8.9e-71 270.8 211 72.0
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 2.9e-69 265.8 205 71.7
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 8.3e-69 264.2 207 68.6
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 4.1e-68 261.9 210 68.6
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 4.1e-68 261.9 209 70.3
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.0e-66 257.3 207 68.6
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 3.9e-66 255.4 182 74.2
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.2e-64 250.4 208 64.4
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 8.0e-64 247.7 209 63.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.4e-60 236.9 207 62.8
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 3.2e-60 235.7 209 64.6
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 4.1e-60 235.3 207 65.7
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.0e-58 230.7 209 64.1
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 6.6e-58 228.0 159 75.5
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.5e-57 226.9 209 61.2
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 4.9e-53 211.8 207 59.4
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 5.4e-52 208.4 195 65.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.7e-50 203.4 184 62.5
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 5.8e-46 188.3 204 54.9
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.4e-44 183.0 204 53.9
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.8e-39 166.8 106 78.3
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 5.3e-39 165.2 106 77.4
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 2.2e-37 159.8 209 47.4
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.2e-27 127.5 106 62.3
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.3e-26 124.0 207 42.5
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 2.3e-26 123.2 112 62.5
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 2.3e-26 123.2 127 55.9
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 6.5e-21 105.1 116 48.3
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 6.5e-21 105.1 81 65.4
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.1e-20 104.4 66 78.8
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 6.0e-19 98.6 198 38.4
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.7e-13 80.5 188 32.4
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.1e-12 77.8 54 72.2
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 3.3e-09 66.2 185 31.9
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.3e-08 64.3 168 34.5
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 3.7e-08 62.8 191 29.3
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 4.8e-08 62.4 121 41.3
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 8.2e-08 61.6 207 27.5


User provided reference genes

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