Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 0.0e+00 1288.5 720 100.0
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 0.0e+00 1257.7 720 98.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.5e-290 1001.9 700 81.9
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.1e-283 977.6 700 80.7
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.4e-278 960.7 700 79.3
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 9.3e-253 877.1 702 73.1
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 3.0e-251 872.1 698 73.6
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 7.2e-245 850.9 701 71.6
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.1e-242 843.6 700 71.4
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.5e-242 843.2 701 71.5
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.8e-241 838.2 701 70.2
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.3e-240 834.7 710 71.3
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.2e-238 829.3 696 71.3
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.9e-237 826.2 717 69.5
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.9e-237 826.2 621 77.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 6.1e-236 821.2 745 67.4
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.1e-234 817.0 700 69.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.0e-234 816.2 700 69.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.1e-232 810.4 700 69.6
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-232 809.3 708 69.4
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 6.9e-232 807.7 698 70.1
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 5.0e-230 801.6 700 69.9
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 8.5e-230 800.8 706 69.5
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.9e-229 799.7 705 69.5
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 5.5e-229 798.1 703 68.0
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 7.2e-229 797.7 700 68.9
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 6.7e-227 791.2 701 67.9
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 9.7e-226 787.3 713 66.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.2e-225 786.2 750 64.5
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 3.7e-225 785.4 701 66.9
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.2e-223 780.4 700 68.0
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-223 779.2 700 67.6
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 7.7e-223 777.7 713 65.8
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.0e-222 777.3 700 67.4
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.3e-222 776.9 700 67.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-221 771.2 708 66.7
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-219 766.1 700 67.0
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.0e-218 763.1 705 66.0
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 4.8e-217 758.4 604 73.8
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 8.2e-217 757.7 707 65.6
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.1e-216 757.3 646 70.7
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.1e-216 755.7 717 66.1
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.2e-215 753.8 702 65.2
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 4.5e-215 751.9 728 64.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.7e-214 750.0 704 65.1
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 5.0e-214 748.4 715 64.3
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.6e-212 743.4 612 72.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 6.3e-209 731.5 703 63.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 2.4e-208 729.6 703 63.6
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 5.4e-208 728.4 702 64.2
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 5.5e-205 718.4 705 62.4
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.2e-204 717.2 721 62.8
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.8e-204 716.1 700 64.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.6e-202 709.5 704 62.9
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.7e-202 708.4 726 60.7
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 7.0e-200 701.4 703 63.3
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 9.2e-200 701.0 711 62.2
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.6e-199 700.3 729 60.9
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 3.5e-199 699.1 704 61.2
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 4.3e-197 692.2 720 60.4
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.0e-195 687.6 704 60.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 5.2e-195 685.3 701 61.2
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.5e-194 683.7 712 61.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-192 677.2 725 59.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-192 677.2 708 61.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 9.2e-192 674.5 717 60.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.6e-191 673.7 703 60.7
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.7e-191 672.9 725 58.8
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 7.8e-191 671.4 722 58.9
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 5.0e-190 668.7 732 57.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 5.0e-190 668.7 716 61.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.3e-189 666.0 705 61.6
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 3.6e-188 662.5 703 60.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.1e-187 661.0 712 59.4
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-187 660.6 717 60.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.3e-187 659.8 715 59.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.3e-187 659.8 717 60.7
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.0e-187 659.1 717 60.4
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.8e-187 658.3 735 57.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.2e-185 653.3 765 57.0
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-184 649.8 727 59.4
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.5e-178 630.6 751 55.5
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.0e-178 630.2 703 58.0
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.4e-178 629.4 707 57.6
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 5.8e-178 628.6 475 73.7
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 9.9e-178 627.9 710 57.6
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.2e-177 626.7 749 56.2
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.9e-177 625.5 708 58.9
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 5.4e-176 622.1 789 54.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.2e-175 620.9 711 57.5
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-173 614.0 740 56.1
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.6e-172 610.5 705 55.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 6.8e-171 605.1 705 55.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.9e-170 601.3 727 56.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.4e-168 596.7 708 55.6
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 5.4e-168 595.5 715 53.0
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.7e-166 590.5 708 55.4
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 5.1e-166 589.0 699 53.9
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 9.3e-160 568.2 380 82.4
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.0e-159 565.5 699 53.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 8.7e-158 561.6 694 53.0
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 4.0e-155 552.7 720 52.9
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 4.9e-153 545.8 711 51.1
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 9.3e-152 541.6 519 64.2
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-151 540.0 719 51.7
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 7.6e-146 521.9 718 51.3
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 8.4e-145 518.5 610 56.6
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.6e-138 495.4 420 71.7
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.6e-135 487.6 660 51.7
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.1e-133 481.5 447 66.0
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-121 441.4 499 59.3
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-120 438.3 499 59.1
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 7.7e-106 389.0 732 41.8
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 4.7e-103 379.8 426 58.9
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.3e-101 373.6 227 89.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 4.4e-93 346.7 236 82.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.6e-89 332.8 371 56.9
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 9.8e-85 318.9 231 77.9
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.3e-84 316.2 229 77.3
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.2e-83 312.4 209 81.8
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.2e-83 312.4 209 81.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 8.0e-79 299.3 184 86.4
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 4.0e-78 297.0 441 48.8
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.8e-71 274.2 594 39.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.8e-70 271.6 172 86.0
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.9e-65 253.8 428 42.1
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 2.1e-55 221.5 134 86.6
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.6e-53 213.0 413 43.1
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.8e-42 176.4 574 31.9
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-40 172.2 324 43.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 9.0e-38 162.9 208 54.8
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 7.9e-34 149.8 243 44.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 4.3e-32 144.1 94 79.8
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.1e-30 139.4 86 88.4
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.5e-29 135.6 189 54.0
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 7.1e-27 126.7 210 46.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-24 116.7 70 90.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-24 116.7 70 90.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-24 116.7 70 90.0
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-23 115.2 297 36.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.8e-23 114.0 72 84.7
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.6e-21 106.7 70 87.1
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.4e-14 85.1 453 26.7
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.2e-13 82.8 65 66.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.2e-10 72.8 79 55.7
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.0e-09 69.7 152 41.4
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 6.7e-09 67.0 355 25.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 8.8e-09 66.6 50 78.0
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.5e-08 65.9 355 25.9
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 7.4e-08 63.5 356 24.7
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 9.7e-08 63.2 354 23.7
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 9.7e-08 63.2 353 24.4
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.2e-07 62.0 357 25.2
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 2.2e-07 62.0 475 25.5
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 4.8e-07 60.8 335 23.9
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 4.8e-07 60.8 332 26.8
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 6.3e-07 60.5 354 24.3
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.1e-06 59.7 336 25.9
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.4e-06 59.3 369 25.2
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.8e-06 58.9 357 25.2
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 1.8e-06 58.9 352 26.7
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 1.8e-06 58.9 363 24.8
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 4.1e-06 57.8 66 56.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 4.1e-06 57.8 335 24.2
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 4.1e-06 57.8 338 25.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 6.9e-06 57.0 64 57.8
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 6.9e-06 57.0 357 24.6
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 9.1e-06 56.6 346 23.4
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 9.1e-06 56.6 273 26.7
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 9.1e-06 56.6 336 24.7
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 9.1e-06 56.6 337 25.5


User provided reference genes

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