Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 0.0e+00 1222.6 611 100.0
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 0.0e+00 1163.7 611 96.4
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.7e-284 982.2 616 81.2
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 5.4e-278 960.7 610 80.7
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.9e-255 885.2 576 77.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 2.5e-254 882.1 612 73.9
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.1e-251 873.2 609 73.6
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 2.2e-247 859.0 610 72.1
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 2.2e-247 859.0 610 70.8
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 2.5e-246 855.5 614 71.2
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 2.1e-245 852.4 608 70.7
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 2.1e-245 852.4 582 74.7
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.8e-241 839.3 609 69.8
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 4.1e-241 838.2 618 68.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 4.5e-240 834.7 613 70.5
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 5.5e-238 827.8 611 69.1
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 6.1e-237 824.3 613 70.5
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 3.9e-236 821.6 617 68.2
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 5.2e-236 821.2 618 65.9
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 5.2e-236 821.2 618 69.1
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 5.2e-236 821.2 585 71.6
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 2.6e-235 818.9 614 66.6
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 4.4e-235 818.1 619 68.2
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 2.8e-234 815.5 618 66.8
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.1e-233 813.5 634 67.7
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 7.0e-233 810.8 575 72.2
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 1.2e-232 810.1 609 66.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.6e-232 809.7 576 72.0
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 4.5e-232 808.1 613 66.4
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 4.5e-232 808.1 609 68.8
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 5.9e-232 807.7 609 67.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 2.9e-231 805.4 609 68.3
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 6.5e-231 804.3 609 68.0
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.5e-231 803.9 615 68.5
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 1.5e-230 803.1 615 68.5
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.2e-230 802.0 606 67.5
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 5.5e-230 801.2 527 76.1
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.0e-228 797.0 606 69.1
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.5e-227 793.1 605 69.1
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 4.4e-227 791.6 613 67.7
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 5.7e-227 791.2 602 68.4
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 7.5e-227 790.8 548 75.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.3e-226 790.0 601 66.4
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.4e-225 786.6 614 68.4
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.4e-225 786.6 610 66.2
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.8e-225 786.2 612 68.3
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 2.4e-225 785.8 611 66.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 2.4e-225 785.8 605 66.3
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 4.1e-225 785.0 587 69.5
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 7.0e-225 784.3 608 67.6
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.0e-224 782.7 610 66.4
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.0e-223 780.4 618 69.7
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.0e-223 780.4 612 67.3
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.2e-223 779.2 610 65.2
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 5.0e-223 778.1 611 68.9
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 3.2e-222 775.4 612 67.6
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 4.2e-222 775.0 606 64.2
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 5.5e-222 774.6 593 68.3
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 3.6e-221 771.9 568 68.7
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 3.6e-221 771.9 610 65.7
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 6.1e-221 771.2 604 64.1
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.0e-220 768.8 680 61.3
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.5e-219 766.5 576 68.1
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 2.6e-219 765.8 580 67.1
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 3.4e-219 765.4 615 64.1
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 1.7e-218 763.1 607 65.1
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.3e-218 760.8 611 63.7
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 1.2e-216 756.9 588 65.0
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.6e-216 756.5 606 63.5
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 3.5e-216 755.4 615 63.3
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 4.5e-216 755.0 581 67.3
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 1.3e-215 753.4 602 64.8
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 8.6e-215 750.7 619 63.5
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.0e-212 743.8 592 64.5
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 2.3e-212 742.7 600 63.3
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.0e-212 742.3 590 64.1
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 5.2e-212 741.5 615 62.3
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 2.6e-211 739.2 618 62.3
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 7.5e-211 737.6 599 65.9
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 7.5e-211 737.6 613 63.8
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.7e-210 736.5 637 63.0
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 1.8e-209 733.0 595 62.5
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.8e-209 733.0 614 62.2
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 4.1e-209 731.9 590 63.4
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 4.5e-208 728.4 617 62.2
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.3e-207 726.9 617 61.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 2.3e-207 726.1 566 65.4
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 3.3e-206 722.2 613 62.2
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.3e-206 721.8 613 62.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 9.5e-206 720.7 613 61.8
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.1e-205 719.5 586 62.8
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.4e-201 706.1 603 61.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 6.0e-200 701.4 630 58.6
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 9.5e-198 694.1 609 61.7
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 5.2e-196 688.3 580 62.9
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 4.1e-193 678.7 603 57.5
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 1.2e-192 677.2 544 66.4
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 3.9e-191 672.2 597 58.3
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 2.8e-189 666.0 583 58.0
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.8e-188 663.3 584 59.1
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.7e-186 655.6 442 73.5
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 4.1e-185 652.1 601 57.7
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 2.1e-181 639.8 568 60.2
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 5.2e-180 635.2 443 72.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 1.7e-178 630.2 565 58.8
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 2.8e-173 612.8 617 54.5
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 4.7e-173 612.1 616 54.1
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.6e-165 587.0 541 57.5
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.8e-162 575.9 344 81.7
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.2e-161 572.4 598 51.5
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 7.4e-158 561.6 479 61.4
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 8.8e-127 458.4 591 46.0
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 9.1e-116 421.8 612 38.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 4.4e-110 402.9 522 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 2.7e-107 393.7 565 41.4
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 6.5e-106 389.0 579 39.6
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-98 364.8 356 52.2
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-97 361.7 237 72.2
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-94 350.9 379 49.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 4.0e-87 326.6 393 46.1
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 5.0e-82 309.7 242 62.8
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 2.5e-73 280.8 233 61.4
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.7e-69 266.9 443 34.3
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-66 257.7 185 71.4
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.3e-65 253.4 355 41.1
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 8.9e-63 245.7 214 58.9
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.2e-35 155.6 204 46.6
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.3e-34 151.4 265 38.5
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.3e-31 140.2 147 46.9
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 1.9e-25 121.7 84 73.8
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-24 119.0 227 34.8
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 3.8e-21 107.5 224 37.9
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 1.1e-20 105.9 423 24.3
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.6e-19 100.9 327 28.4
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 5.1e-18 97.1 100 61.0
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 4.8e-16 90.5 47 83.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 3.8e-13 80.9 149 34.9
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 5.1e-10 70.5 53 62.3


User provided reference genes

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