Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.2e-99 365.5 176 100.0
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.5e-84 315.1 164 89.6
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.0e-68 262.7 167 73.1
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 2.7e-68 262.3 169 74.6
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.3e-67 259.2 179 68.7
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 4.4e-63 245.0 162 68.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.7e-62 241.9 170 67.1
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.1e-61 240.4 162 69.8
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.1e-61 240.4 165 69.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.6e-60 236.5 160 70.6
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.6e-60 236.5 131 83.2
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 7.8e-60 234.2 134 77.6
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.3e-59 232.6 158 68.4
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 9.5e-58 227.3 158 66.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.6e-57 226.5 165 64.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.8e-57 225.7 159 66.7
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.8e-57 225.7 159 65.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.1e-57 224.6 165 64.2
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.4e-56 223.4 162 71.6
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.3e-56 222.6 175 63.4
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.3e-56 222.6 175 63.4
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.0e-56 221.9 159 65.4
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 4.0e-56 221.9 159 65.4
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 6.8e-56 221.1 166 66.3
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 8.9e-56 220.7 163 65.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.5e-55 219.9 144 70.1
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.5e-55 219.9 161 70.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.5e-55 219.9 149 66.4
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.6e-55 219.2 175 61.7
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 3.4e-55 218.8 158 65.2
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 5.7e-55 218.0 155 67.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 5.7e-55 218.0 175 62.3
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 7.5e-55 217.6 139 72.7
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.5e-55 217.6 165 63.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 3.7e-54 215.3 136 74.3
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 4.9e-54 214.9 175 61.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 8.3e-54 214.2 144 68.1
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.1e-53 213.8 126 76.2
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.1e-53 213.8 175 61.7
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.4e-53 213.4 117 84.6
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 5.4e-53 211.5 175 60.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 9.2e-53 210.7 159 65.4
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.2e-52 210.3 158 64.6
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 2.0e-52 209.5 114 81.6
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 3.5e-52 208.8 154 65.6
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 5.9e-52 208.0 162 63.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 7.8e-52 207.6 158 64.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.3e-51 206.8 157 66.2
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.7e-51 206.5 158 63.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 2.3e-51 206.1 157 61.8
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.9e-51 205.3 161 61.5
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.9e-51 205.3 169 58.0
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 3.9e-51 205.3 172 61.0
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.9e-51 205.3 146 67.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 6.6e-51 204.5 160 63.8
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 8.6e-51 204.1 137 71.5
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.1e-50 203.8 163 61.3
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.5e-50 203.4 156 60.3
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.5e-50 203.4 169 61.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.9e-50 203.0 152 65.1
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.5e-50 202.6 129 73.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.5e-50 202.6 172 58.7
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 3.3e-50 202.2 159 61.0
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 5.6e-50 201.4 160 60.0
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 5.6e-50 201.4 157 63.7
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.1e-49 199.5 159 58.5
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.7e-49 198.4 172 58.7
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 6.2e-49 198.0 151 61.6
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 6.2e-49 198.0 160 63.1
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.0e-49 197.6 169 56.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.1e-48 197.2 151 60.9
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.1e-48 197.2 112 79.5
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.4e-48 196.8 150 61.3
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.4e-48 196.8 150 61.3
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.4e-48 196.8 146 65.8
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 4.0e-48 195.3 129 71.3
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.2e-48 194.9 112 79.5
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 8.9e-48 194.1 115 78.3
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.2e-47 193.7 115 77.4
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-47 193.4 174 58.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 5.8e-47 191.4 128 71.9
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 7.5e-47 191.0 117 77.8
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.8e-47 190.7 129 69.8
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 2.2e-46 189.5 117 76.9
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 3.7e-46 188.7 126 68.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 8.3e-46 187.6 114 76.3
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 2.4e-45 186.0 128 71.1
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.2e-45 185.7 147 61.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.2e-45 185.7 170 53.5
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 4.1e-45 185.3 113 71.7
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 7.8e-44 181.0 112 75.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.0e-43 180.6 129 68.2
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.1e-42 177.2 112 72.3
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 9.5e-42 174.1 149 55.0
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 8.1e-41 171.0 119 63.0
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.1e-40 170.6 127 59.8
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.5e-39 166.8 91 81.3
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.6e-39 166.0 91 83.5
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.9e-39 164.1 164 52.4
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.9e-39 164.1 164 52.4
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.7e-38 163.3 91 82.4
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 6.4e-38 161.4 112 63.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 6.4e-38 161.4 122 60.7
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.2e-37 159.1 119 63.0
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.1e-37 158.7 123 64.2
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 7.1e-37 157.9 158 54.4
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 4.6e-36 155.2 129 61.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 3.9e-35 152.1 147 50.3
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.5e-34 150.2 116 57.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.5e-34 150.2 95 73.7
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 5.6e-34 148.3 105 65.7
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.2e-33 147.1 84 79.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.2e-33 147.1 112 60.7
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 2.6e-31 139.4 105 61.0
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.4e-29 133.7 150 46.7
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 4.1e-29 132.1 107 57.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 1.2e-28 130.6 107 56.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.7e-28 129.4 107 56.1
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.7e-27 126.7 69 84.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.3e-27 126.3 67 85.1
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 2.3e-27 126.3 68 85.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 5.6e-26 121.7 68 80.9
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 9.6e-26 120.9 75 69.3
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.1e-25 119.8 117 47.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-24 116.7 88 61.4
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.4e-24 116.3 90 63.3
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.4e-24 116.3 90 63.3
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 5.2e-24 115.2 75 68.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.7e-22 110.2 85 64.7
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.4e-21 106.3 147 41.5
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.6e-20 103.6 87 55.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.5e-20 102.4 82 54.9
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.3e-19 100.5 56 82.1
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.3e-19 99.8 61 75.4
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.2e-15 87.4 72 52.8
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 3.0e-11 72.8 40 82.5
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 6.7e-11 71.6 48 68.8
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.3e-09 67.4 84 46.4


User provided reference genes

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