Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.5e-115 419.5 207 100.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.5e-115 417.9 207 99.5
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.8e-108 396.0 207 94.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 7.4e-102 374.0 207 87.0
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 8.4e-98 360.5 207 81.2
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 8.4e-98 360.5 207 82.1
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 3.2e-97 358.6 207 82.1
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 7.9e-96 354.0 207 81.6
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.3e-95 353.2 207 81.2
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.3e-95 353.2 207 80.7
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 7.4e-94 347.4 207 78.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 9.7e-94 347.1 207 77.3
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.2e-93 344.0 204 79.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.4e-92 342.4 207 78.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.4e-92 342.4 207 78.3
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.1e-92 341.7 207 77.8
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.5e-91 339.7 207 78.3
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.6e-91 339.0 207 76.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.6e-91 339.0 207 78.3
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 4.5e-91 338.2 207 77.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 7.6e-91 337.4 207 77.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.6e-91 337.4 207 75.8
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.0e-90 337.0 207 78.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.3e-90 336.7 207 76.3
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.3e-90 336.7 207 76.8
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-90 336.7 207 77.3
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.3e-90 336.7 207 75.4
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.7e-90 336.3 207 76.8
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.7e-90 336.3 204 77.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.8e-90 335.1 203 78.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 5.0e-90 334.7 205 76.1
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.5e-90 334.3 207 74.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.5e-90 334.3 207 75.8
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 6.5e-90 334.3 207 76.3
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 8.5e-90 334.0 204 76.5
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 8.5e-90 334.0 206 76.2
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 8.5e-90 334.0 207 76.8
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 8.5e-90 334.0 207 74.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 8.5e-90 334.0 205 77.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.1e-89 333.6 207 75.4
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.1e-89 333.6 207 75.4
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.4e-89 333.2 207 77.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 2.5e-89 332.4 207 76.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.5e-89 332.4 203 76.4
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.2e-89 332.0 207 74.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 5.5e-89 331.3 207 77.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.5e-89 331.3 207 77.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 5.5e-89 331.3 204 76.5
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.5e-89 331.3 207 75.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.2e-89 330.9 207 76.3
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.2e-89 330.9 205 77.1
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 7.2e-89 330.9 205 77.1
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 9.3e-89 330.5 204 76.5
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 9.3e-89 330.5 204 77.0
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.2e-88 330.1 204 77.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.6e-88 329.7 207 75.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-88 329.7 207 75.4
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.1e-88 329.3 203 75.9
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 2.1e-88 329.3 207 73.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.7e-88 328.9 207 74.4
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.6e-88 328.2 203 75.4
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 6.1e-88 327.8 207 75.8
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 6.1e-88 327.8 207 74.9
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.3e-87 326.6 207 73.9
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.3e-87 326.6 204 75.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.8e-87 326.2 207 73.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 2.3e-87 325.9 207 73.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.0e-87 325.5 200 76.5
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 3.0e-87 325.5 207 73.9
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 5.1e-87 324.7 207 73.9
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.9e-86 322.8 206 72.8
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 3.3e-86 322.0 207 73.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.3e-86 322.0 207 74.4
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 5.7e-86 321.2 207 73.4
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 5.7e-86 321.2 205 75.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 7.4e-86 320.9 207 71.0
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.8e-85 318.9 207 73.9
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 3.7e-85 318.5 207 72.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.8e-85 318.2 207 72.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 8.2e-85 317.4 207 72.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 8.2e-85 317.4 206 72.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 8.2e-85 317.4 207 71.0
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.1e-84 315.5 207 73.9
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.1e-84 315.5 207 72.5
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-83 313.5 207 74.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.5e-83 313.2 207 72.5
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.5e-83 313.2 207 73.9
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.0e-83 312.8 207 72.9
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.6e-83 312.4 207 72.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.4e-83 312.0 207 72.0
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 5.9e-83 311.2 207 71.0
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 7.7e-83 310.8 204 74.0
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.0e-82 310.5 207 72.5
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.3e-82 310.1 202 71.8
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.2e-82 309.3 206 70.9
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 5.0e-82 308.1 207 73.9
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.9e-81 306.2 207 72.9
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.2e-81 305.1 180 78.3
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 7.2e-81 304.3 207 71.0
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.7e-80 302.4 207 72.5
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.4e-79 300.1 207 70.0
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.0e-79 298.9 207 69.6
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.3e-78 295.4 196 69.9
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.3e-77 293.5 176 76.7
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.3e-77 293.5 204 68.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 8.2e-77 290.8 207 66.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.9e-76 287.7 176 75.0
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 8.5e-74 280.8 199 68.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.2e-72 276.9 204 64.2
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.6e-72 276.6 216 64.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.2e-69 266.2 206 62.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 6.3e-69 264.6 205 61.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 4.1e-68 261.9 176 70.5
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.1e-64 249.6 202 58.9
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.7e-62 241.5 182 65.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.1e-60 235.7 144 78.5
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 5.0e-58 228.4 130 80.8
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.9e-57 226.5 204 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 9.4e-57 224.2 207 52.7
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.8e-55 219.9 203 52.7
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 4.4e-54 215.3 206 54.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 7.0e-52 208.0 214 47.2
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.7e-51 206.1 207 52.2
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 3.5e-51 205.7 133 77.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.0e-47 192.2 143 69.2
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 5.7e-46 188.3 131 74.0
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 7.0e-44 181.4 225 38.7
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 4.3e-41 172.2 209 42.1
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 6.1e-40 168.3 109 74.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.3e-31 139.8 130 57.7
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.7e-26 123.6 91 62.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 5.1e-26 122.1 78 75.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-25 120.6 88 69.3
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.2e-24 117.5 71 81.7
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 4.1e-20 102.4 108 46.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 8.4e-13 78.2 54 74.1
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.3e-10 70.1 247 30.8
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 3.9e-10 69.3 44 72.7
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 2.1e-08 63.5 39 76.9
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 2.8e-08 63.2 60 55.0
SGA_v2.0_scaffold250G44986 Striga asiatica HOM05D005616 ORTHO05D403636 5.8e-06 55.5 33 63.6


User provided reference genes

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