Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.2e-29 132.5 67 100.0
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.3e-20 102.4 51 100.0
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 5.3e-17 90.5 54 85.2
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 6.9e-17 90.1 57 75.4
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 6.9e-17 90.1 54 79.6
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 9.0e-17 89.7 51 84.3
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 2.0e-16 88.6 54 81.5
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 2.6e-16 88.2 51 84.3
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 3.4e-16 87.8 51 82.4
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 3.4e-16 87.8 51 84.3
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 5.8e-16 87.0 54 77.8
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 5.8e-16 87.0 54 77.8
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 9.9e-16 86.3 51 84.3
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 1.7e-15 85.5 54 75.9
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.7e-15 85.5 45 88.9
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 2.2e-15 85.1 45 88.9
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 2.2e-15 85.1 54 75.9
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 2.9e-15 84.7 54 75.9
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 3.8e-15 84.3 47 85.1
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.8e-15 84.3 54 75.9
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 8.4e-15 83.2 45 86.7
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.1e-14 82.8 45 86.7
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.4e-14 82.4 52 76.9
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.4e-14 82.4 49 83.7
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.4e-14 82.4 49 83.7
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.4e-14 82.4 49 83.7
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 1.4e-14 82.4 47 80.9
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 2.4e-14 81.6 47 80.9
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 2.4e-14 81.6 51 76.5
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 2.4e-14 81.6 54 74.1
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 3.2e-14 81.3 51 76.5
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.2e-14 80.9 52 75.0
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 4.2e-14 80.9 52 75.0
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 5.5e-14 80.5 54 70.4
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 5.5e-14 80.5 54 70.4
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 5.5e-14 80.5 51 76.5
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 5.5e-14 80.5 51 76.5
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 5.5e-14 80.5 51 76.5
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 5.5e-14 80.5 51 76.5
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 7.1e-14 80.1 47 78.7
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 7.1e-14 80.1 54 72.2
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 9.3e-14 79.7 52 73.1
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 9.3e-14 79.7 47 80.9
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 9.3e-14 79.7 47 80.9
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.2e-13 79.3 47 80.9
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.2e-13 79.3 47 80.9
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 1.2e-13 79.3 47 78.7
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 1.6e-13 79.0 51 74.5
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 1.6e-13 79.0 51 74.5
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.6e-13 79.0 54 72.2
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.6e-13 79.0 51 72.5
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 1.6e-13 79.0 51 74.5
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.6e-13 79.0 45 84.4
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 2.1e-13 78.6 51 74.5
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 2.1e-13 78.6 49 79.6
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 2.1e-13 78.6 41 90.2
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.5e-13 77.8 54 72.2
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 6.0e-13 77.0 47 78.7
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 6.0e-13 77.0 47 78.7
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.0e-13 77.0 54 70.4
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 6.0e-13 77.0 47 78.7
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 6.0e-13 77.0 51 72.5
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 6.0e-13 77.0 45 82.2
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 6.0e-13 77.0 45 84.4
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.9e-13 76.6 45 82.2
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.9e-13 76.6 45 82.2
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 7.9e-13 76.6 49 77.6
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.0e-12 76.3 51 72.5
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.0e-12 76.3 51 72.5
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 1.3e-12 75.9 49 67.3
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 1.8e-12 75.5 47 74.5
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.3e-12 75.1 45 80.0
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 2.3e-12 75.1 45 82.2
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 3.0e-12 74.7 55 63.6
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 6.7e-12 73.6 47 76.6
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.1e-11 72.8 54 68.5
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.5e-11 72.4 54 66.7
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.9e-11 72.0 54 66.7
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 7.4e-11 70.1 71 54.9
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.8e-10 68.2 45 80.0
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 2.8e-10 68.2 42 78.6
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.2e-10 67.0 54 59.3
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 1.1e-09 66.2 86 47.7
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 4.0e-09 64.3 37 81.1
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 2.6e-08 61.6 55 61.8
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.4e-07 56.6 35 77.1


User provided reference genes

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