Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.6e-68 261.9 130 100.0
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.7e-59 232.6 131 90.8
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.8e-59 231.1 130 89.2
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 4.8e-59 231.1 131 87.8
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.3e-59 230.7 130 87.7
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 6.3e-59 230.7 129 88.4
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 5.4e-58 227.6 130 86.2
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.7e-57 225.3 131 88.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.5e-57 224.9 130 87.7
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.0e-56 223.4 130 86.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 3.8e-56 221.5 129 86.0
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.8e-56 221.5 134 85.1
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.9e-55 219.2 130 86.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.6e-54 216.1 130 86.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 4.7e-54 214.5 130 86.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 6.1e-54 214.2 130 83.1
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 8.0e-54 213.8 130 82.3
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 8.0e-54 213.8 130 82.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-53 213.4 132 84.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.4e-53 213.0 130 84.6
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.8e-53 212.6 130 83.1
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.3e-53 212.2 130 79.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.3e-53 212.2 124 86.3
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.0e-53 211.5 131 81.7
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 5.2e-53 211.1 130 83.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.0e-52 209.1 130 80.0
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.4e-52 208.0 130 80.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.7e-52 207.6 130 83.8
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.3e-51 203.8 131 82.4
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 83.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-50 203.4 132 81.1
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.4e-50 203.0 132 80.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.4e-50 203.0 131 80.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 79.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.8e-50 202.6 132 80.3
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.8e-50 202.6 133 82.0
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.1e-50 201.8 131 80.9
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.1e-50 201.8 130 78.5
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 3.1e-50 201.8 129 78.3
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.1e-50 201.8 131 80.2
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 3.1e-50 201.8 133 81.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.4e-50 201.1 130 78.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 5.4e-50 201.1 124 80.6
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.4e-50 201.1 132 80.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.4e-50 201.1 132 81.1
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.2e-49 199.9 131 81.7
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.6e-49 199.5 130 80.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-49 199.5 130 79.2
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.7e-49 198.7 130 80.0
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.9e-49 197.6 128 79.7
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.9e-49 197.6 128 79.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.8e-49 197.2 131 80.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 7.8e-49 197.2 131 80.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.0e-48 196.8 130 76.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.3e-48 195.7 131 80.2
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 78.9
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.9e-48 195.3 133 78.9
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.9e-48 194.9 132 78.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.0e-48 194.5 130 76.2
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 6.6e-48 194.1 132 76.5
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 6.6e-48 194.1 134 76.9
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.1e-47 193.4 132 78.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 77.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-47 193.4 131 80.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.9e-47 192.6 131 77.1
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.3e-47 191.8 118 78.8
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.3e-47 191.8 130 76.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 7.3e-47 190.7 130 75.4
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 78.5
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 78.5
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.1e-46 189.1 132 73.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 3.6e-46 188.3 130 76.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 4.7e-46 188.0 131 77.1
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.3e-45 185.7 127 75.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.2e-44 183.3 133 75.9
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-44 183.3 130 75.4
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-44 183.0 133 72.9
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-44 183.0 133 72.2
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.5e-44 183.0 134 71.6
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.5e-44 183.0 134 71.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 73.1
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 3.4e-44 181.8 133 74.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 7.5e-44 180.6 124 75.8
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 7.5e-44 180.6 124 75.8
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 9.8e-44 180.3 133 74.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 9.8e-44 180.3 118 77.1
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.8e-44 180.3 133 73.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-43 179.5 129 72.1
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.7e-43 179.5 110 81.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 73.1
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 73.1
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 73.1
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 110 81.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.9e-43 178.7 131 74.0
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.7e-43 178.3 118 78.8
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 8.3e-43 177.2 133 70.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 69.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 69.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 69.9
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 115 73.9
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.4e-42 176.4 131 73.3
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.9e-42 176.0 136 72.8
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.9e-42 176.0 130 71.5
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.1e-42 174.9 106 84.9
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.0e-42 174.1 115 76.5
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.7e-41 172.2 131 74.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 4.6e-41 171.4 117 74.4
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.6e-41 171.4 130 70.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.0e-40 170.2 133 72.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 133 72.2
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 96 86.5
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 3.0e-40 168.7 133 72.9
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 8.6e-40 167.2 133 72.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.9e-39 166.0 105 81.9
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.5e-39 165.6 130 68.5
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.3e-39 164.1 129 69.8
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.3e-39 164.1 129 69.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.2e-38 163.3 132 71.2
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.1e-38 162.5 112 76.8
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.1e-38 162.5 110 74.5
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 6.2e-38 161.0 110 73.6
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 6.2e-38 161.0 116 71.6
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.1e-37 160.2 130 68.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.1e-37 160.2 110 73.6
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.1e-37 160.2 115 72.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 8.9e-37 157.1 116 71.6
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.8e-36 154.5 120 68.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.8e-36 154.5 95 80.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.7e-35 151.8 95 78.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.4e-34 149.1 110 67.3
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 9.2e-34 147.1 114 67.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 87 81.6
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.1e-33 146.0 115 66.1
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.5e-33 145.2 129 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.5e-31 139.8 115 61.7
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.1e-30 136.0 111 64.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 8.1e-30 134.0 119 63.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.1e-29 133.7 130 60.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.4e-29 133.3 111 63.1
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.3e-29 132.5 87 77.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.8e-29 131.0 95 69.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.9e-27 125.6 115 61.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 8.3e-27 124.0 124 58.1
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.2e-25 120.2 69 89.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 5.6e-23 111.3 116 60.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 7.3e-23 110.9 104 60.6
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.8e-21 106.3 74 75.7
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.8e-21 104.4 78 71.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.3e-19 100.1 85 60.0
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 2.4e-18 95.9 98 50.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-17 93.2 95 60.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.0e-16 89.0 69 69.6
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-15 86.7 68 58.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.5e-15 86.7 80 56.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.5e-07 59.3 81 44.4


User provided reference genes

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