Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.7e-74 280.8 139 100.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-67 258.5 138 92.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.8e-66 253.4 132 93.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-64 250.0 132 92.4
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-64 250.0 132 92.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-64 249.6 132 92.4
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 7.5e-58 227.3 132 81.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.9e-57 224.6 132 81.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.4e-56 223.0 132 81.1
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.4e-56 221.1 128 82.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.9e-55 217.6 132 79.5
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.3e-54 216.5 132 78.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 8.6e-54 213.8 132 75.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.3e-53 211.5 128 77.3
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 5.6e-53 211.1 132 73.5
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.2e-53 210.7 132 74.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-52 209.9 132 75.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.8e-52 208.8 132 75.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.0e-51 205.3 132 72.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.0e-51 205.3 132 72.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 5.2e-51 204.5 132 72.0
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-50 203.4 122 85.2
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-50 203.4 132 72.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.4e-50 201.8 132 68.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.4e-50 201.4 132 71.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 5.7e-50 201.1 132 68.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 9.8e-50 200.3 132 71.2
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-49 199.9 132 69.7
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.7e-49 199.5 132 68.2
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.2e-49 199.1 132 69.7
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-49 198.7 132 70.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.7e-49 198.4 132 78.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.7e-49 198.4 132 69.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.9e-49 198.0 132 69.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.3e-49 197.2 132 69.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.3e-49 197.2 132 68.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.3e-49 197.2 132 68.2
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 8.3e-49 197.2 132 68.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 8.3e-49 197.2 132 65.9
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.4e-48 196.4 132 68.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.4e-48 196.4 132 65.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.2e-48 195.3 132 66.7
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.2e-48 195.3 132 66.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.2e-48 195.3 133 67.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.4e-48 194.5 132 67.4
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.0e-48 194.1 132 68.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.0e-48 194.1 132 68.2
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 9.2e-48 193.7 132 67.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 9.2e-48 193.7 132 68.2
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.2e-47 193.4 132 67.4
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-47 193.4 132 64.4
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 67.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 66.7
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 66.7
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 66.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 66.7
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 67.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 67.4
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 65.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.5e-47 191.8 132 65.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.6e-47 191.4 132 65.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.6e-47 191.4 132 65.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 5.9e-47 191.0 132 65.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 7.8e-47 190.7 132 65.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 7.8e-47 190.7 132 65.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.8e-47 190.7 132 66.7
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-46 190.3 132 65.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.0e-46 190.3 132 65.2
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.0e-46 190.3 132 68.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-46 189.9 132 65.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-46 189.9 132 66.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.3e-46 189.9 132 65.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.7e-46 189.5 132 65.2
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.7e-46 189.5 132 64.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.3e-46 189.1 132 65.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.3e-46 189.1 132 65.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.3e-46 189.1 132 65.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.3e-46 189.1 128 68.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.0e-46 188.7 132 65.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.0e-46 188.7 132 68.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.0e-46 188.7 132 66.7
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 6.6e-46 187.6 132 64.4
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.6e-46 187.6 132 65.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 6.6e-46 187.6 132 65.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.6e-46 187.2 132 64.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.1e-45 186.8 132 61.4
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.5e-45 186.4 132 64.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.5e-45 186.4 132 63.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-45 185.7 132 64.4
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.5e-45 185.7 132 64.4
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.5e-45 185.7 132 62.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 3.3e-45 185.3 132 64.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.3e-45 185.3 132 64.4
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.3e-45 185.3 132 64.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 4.3e-45 184.9 132 64.4
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.6e-45 184.5 132 64.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 5.6e-45 184.5 132 65.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 7.3e-45 184.1 132 63.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-44 183.3 128 69.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.6e-44 183.0 132 64.4
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 2.1e-44 182.6 132 65.2
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.1e-44 182.6 132 65.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.6e-44 181.8 132 61.4
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.6e-44 181.8 132 62.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.6e-44 181.8 132 62.9
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.6e-44 181.8 132 62.9
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.6e-44 181.8 132 65.2
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 4.7e-44 181.4 132 62.1
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 4.7e-44 181.4 132 61.4
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 6.2e-44 181.0 132 62.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 6.2e-44 181.0 132 62.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.2e-44 181.0 132 61.4
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.0e-44 180.6 132 62.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.0e-43 180.3 132 62.9
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.0e-43 180.3 132 59.8
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.4e-43 179.9 132 62.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.8e-43 179.5 132 62.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.8e-43 179.5 132 63.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 5.2e-43 177.9 132 59.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 6.8e-43 177.6 132 62.9
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.8e-43 177.6 132 60.6
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 6.8e-43 177.6 132 59.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 8.9e-43 177.2 132 63.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-42 176.8 132 60.6
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.5e-42 176.4 132 60.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.5e-42 176.4 132 59.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-42 176.0 128 64.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.4e-42 174.9 128 61.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.4e-42 174.9 132 57.6
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.8e-42 174.5 132 57.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 7.5e-42 174.1 132 57.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.5e-42 174.1 133 59.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.9e-41 172.2 132 59.1
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.9e-40 169.5 132 56.1
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-39 166.4 85 91.8
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-39 166.4 132 59.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.5e-39 165.2 132 58.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.0e-38 163.7 109 68.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.0e-38 162.2 128 60.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.0e-38 162.2 134 53.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 8.6e-38 160.6 128 64.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.5e-37 159.8 132 56.8
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 7.3e-37 157.5 132 56.1
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.8e-35 151.0 106 64.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.9e-33 145.6 97 66.0
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.0e-22 110.5 133 39.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-22 110.5 128 46.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.0e-18 96.3 128 35.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.0e-18 96.3 132 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.6e-18 95.9 128 35.9
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 5.8e-18 94.7 86 52.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.1e-15 86.3 126 34.9
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 4.4e-10 68.6 129 30.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 4.9e-09 65.1 55 50.9


User provided reference genes

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