Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.0e-117 425.2 222 100.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 9.6e-116 420.2 222 98.6
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 4.6e-94 348.2 225 78.7
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 2.9e-88 328.9 226 78.8
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 7.4e-84 314.3 223 73.5
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 3.7e-83 312.0 193 79.3
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.4e-82 309.3 191 77.0
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 3.1e-82 308.9 223 71.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 4.1e-82 308.5 187 79.7
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.1e-82 308.5 196 79.6
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 1.6e-81 306.6 180 82.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.3e-80 303.5 222 69.8
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 6.5e-80 301.2 181 80.7
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 8.5e-80 300.8 187 78.6
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 8.5e-80 300.8 187 79.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.1e-79 300.4 193 78.2
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.9e-79 299.7 222 70.7
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.9e-79 299.7 222 69.8
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.9e-79 299.7 187 79.1
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.9e-79 299.7 190 80.0
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.5e-79 299.3 187 78.6
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 3.2e-79 298.9 190 78.4
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 3.2e-79 298.9 187 79.1
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.2e-79 298.5 222 70.7
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 5.5e-79 298.1 222 71.2
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 5.5e-79 298.1 222 69.8
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 9.4e-79 297.4 184 78.8
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 9.4e-79 297.4 190 78.9
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.2e-78 297.0 197 77.2
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.2e-78 297.0 193 76.7
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 2.1e-78 296.2 187 79.1
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 2.7e-78 295.8 198 75.8
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 3.6e-78 295.4 193 75.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 3.6e-78 295.4 186 76.9
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 8.0e-78 294.3 184 77.7
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.0e-77 293.9 226 69.9
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.3e-77 292.7 216 69.4
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 2.3e-77 292.7 184 78.3
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 3.0e-77 292.4 222 67.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 4.0e-77 292.0 225 68.4
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 4.0e-77 292.0 192 74.5
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 4.0e-77 292.0 187 77.5
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 5.2e-77 291.6 225 68.4
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 5.2e-77 291.6 222 68.5
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 5.2e-77 291.6 232 69.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 5.2e-77 291.6 186 75.8
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 8.8e-77 290.8 193 74.6
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.6e-76 289.3 194 74.7
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.6e-76 289.3 196 74.5
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 3.3e-76 288.9 195 73.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 5.7e-76 288.1 214 71.0
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 7.5e-76 287.7 210 70.5
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 7.5e-76 287.7 210 70.5
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 9.7e-76 287.3 191 74.3
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 9.7e-76 287.3 207 70.5
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 9.7e-76 287.3 223 66.8
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.3e-75 287.0 224 67.0
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.7e-75 286.6 191 72.3
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 2.2e-75 286.2 184 76.1
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 6.3e-75 284.6 175 77.1
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 6.3e-75 284.6 175 77.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 6.3e-75 284.6 186 74.2
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.8e-74 283.1 175 77.1
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.8e-74 283.1 175 77.1
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.8e-74 283.1 185 73.0
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 7.0e-74 281.2 175 75.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 7.0e-74 281.2 211 71.6
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.6e-73 280.0 214 67.3
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 1.6e-73 280.0 190 73.7
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 4.5e-73 278.5 182 74.2
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.0e-72 277.3 223 64.6
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.7e-72 276.6 189 72.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.9e-72 275.8 254 60.6
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.5e-71 273.5 191 68.6
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.5e-71 273.5 175 73.7
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 6.1e-70 268.1 207 62.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.4e-68 262.3 192 68.2
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 7.5e-68 261.2 192 68.8
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 4.1e-66 255.4 141 85.8
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.7e-64 250.0 190 70.0
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.8e-64 248.8 144 81.2
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.5e-63 246.9 192 68.8
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 1.9e-63 246.5 141 85.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 3.6e-62 242.3 173 66.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 2.3e-61 239.6 173 65.9
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 9.8e-60 234.2 151 77.5
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.3e-59 233.8 188 66.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.7e-59 233.4 220 54.5
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 3.1e-58 229.2 159 73.6
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 4.1e-58 228.8 171 74.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.3e-56 223.0 173 59.5
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 3.8e-56 222.2 174 64.4
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 3.8e-56 222.2 194 66.0
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 8.6e-56 221.1 167 62.3
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.1e-55 220.7 173 59.0
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 2.3e-53 213.0 164 64.6
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.8e-46 189.5 156 64.1
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.2e-43 179.9 120 75.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 4.3e-39 165.6 123 65.0
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 7.3e-39 164.9 190 48.4
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.6e-38 162.5 183 47.0
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 4.7e-38 162.2 174 48.9
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.4e-34 149.8 120 60.0
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 9.2e-34 147.9 233 39.5
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 3.5e-33 146.0 85 76.5
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.0e-32 144.4 85 75.3
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.8e-29 133.7 170 43.5
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.0e-28 130.2 95 72.6
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.5e-23 114.0 98 62.2
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 9.6e-23 111.3 55 85.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 3.6e-22 109.4 177 39.0
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 3.8e-19 99.4 72 72.2
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 4.9e-19 99.0 92 57.6
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 9.3e-18 94.7 82 58.5
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 5.6e-15 85.5 62 66.1
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.1e-13 81.3 64 64.1
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.9e-11 73.2 34 97.1
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 7.9e-09 65.1 33 87.9
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 1.8e-08 63.9 134 31.3
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 3.0e-08 63.2 57 56.1
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.0e-08 63.2 196 25.5
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 5.1e-08 62.4 165 29.7
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 8.7e-08 61.6 171 28.7
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 5.6e-07 58.9 177 28.8
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 7.4e-07 58.5 177 27.1
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 9.6e-07 58.2 191 26.2
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.3e-06 57.8 169 26.6
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 1.3e-06 57.8 106 31.1
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 2.8e-06 56.6 198 26.3
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 2.8e-06 56.6 187 24.6
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 3.6e-06 56.2 204 26.5
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 4.8e-06 55.8 165 24.2
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 6.2e-06 55.5 165 26.1
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 6.2e-06 55.5 109 31.2


User provided reference genes

Program Settings