Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.0e-153 547.4 424 100.0
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.0e-153 547.4 424 100.0
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 9.1e-107 391.3 274 73.0
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 5.6e-96 355.5 276 68.8
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 7.3e-88 328.6 279 64.2
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 1.6e-79 300.8 279 58.1
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 9.5e-72 275.0 217 67.3
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 4.7e-63 246.1 214 61.7
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 9.9e-61 238.4 202 66.3
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 9.9e-61 238.4 186 65.6
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.9e-59 234.2 202 64.9
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 4.6e-58 229.6 206 61.7
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.3e-57 228.0 202 59.9
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.7e-57 227.6 277 48.0
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 3.0e-57 226.9 202 58.4
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 2.4e-54 217.2 209 55.5
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.0e-53 214.2 213 52.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 2.9e-52 210.3 272 45.6
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.4e-51 208.0 207 57.0
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 6.0e-50 202.6 210 52.4
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.0e-49 201.8 211 52.1
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.0e-49 200.3 189 57.7
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 3.0e-49 200.3 208 54.8
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 5.1e-49 199.5 202 54.0
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 6.7e-49 199.1 186 57.5
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 1.5e-48 198.0 174 59.2
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 4.0e-46 189.9 201 51.2
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.5e-45 188.0 212 51.4
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 9.9e-45 185.3 174 58.6
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 1.3e-44 184.9 202 52.5
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.7e-44 184.5 275 40.7
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.7e-44 184.5 275 40.7
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 2.9e-44 183.7 177 55.4
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 4.9e-44 183.0 205 50.2
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.2e-43 180.3 180 51.7
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 9.3e-43 178.7 190 49.5
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.2e-42 178.3 190 51.1
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.2e-42 178.3 179 54.7
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.6e-42 177.9 199 48.2
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.0e-41 175.3 221 48.0
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.0e-41 175.3 178 51.7
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.3e-41 174.9 178 51.1
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 3.0e-41 173.7 155 56.8
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 2.5e-40 170.6 190 49.5
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 5.6e-40 169.5 220 45.9
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.8e-38 164.5 202 48.5
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 9.0e-38 162.2 189 50.8
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 2.9e-36 157.1 187 48.1
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 2.9e-36 157.1 218 45.4
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 3.8e-36 156.8 158 55.1
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 3.8e-36 156.8 194 46.4
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.9e-35 154.5 190 44.2
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 5.5e-35 152.9 208 46.6
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 9.3e-35 152.1 206 45.6
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 9.3e-35 152.1 176 44.9
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.6e-34 151.4 189 43.9
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 4.6e-34 149.8 184 45.1
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 5.1e-33 146.4 138 56.5
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 1.6e-31 141.4 175 42.3
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 1.5e-29 134.8 176 40.9
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 3.4e-29 133.7 166 44.6
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 3.8e-28 130.2 175 44.6
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 6.5e-28 129.4 182 42.9
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 3.6e-26 123.6 160 43.8
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 6.1e-26 122.9 178 42.1
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 6.1e-26 122.9 168 42.9
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 7.9e-26 122.5 182 41.8
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.4e-25 121.7 180 43.3
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 6.7e-25 119.4 139 49.6
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 6.7e-25 119.4 139 49.6
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 6.7e-25 119.4 173 41.0
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 1.5e-24 118.2 167 38.9
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 2.5e-24 117.5 139 47.5
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 2.5e-24 117.5 167 38.9
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 1.7e-23 114.8 167 38.9
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 2.8e-23 114.0 139 48.9
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.8e-23 113.2 172 39.0
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 6.3e-23 112.8 139 47.5
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 8.2e-23 112.5 173 39.9
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 8.2e-23 112.5 196 39.8
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.1e-22 112.1 167 43.1
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 2.0e-21 107.8 181 39.8
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 2.6e-21 107.5 141 46.8
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 7.7e-21 105.9 139 48.2
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.7e-20 104.8 166 41.6
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 8.5e-20 102.4 188 40.4
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.1e-19 102.1 182 39.6
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 1.9e-19 101.3 156 41.7
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 1.2e-18 98.6 97 53.6
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.0e-17 95.5 125 47.2
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 6.7e-17 92.8 181 33.1
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 2.0e-16 91.3 132 40.9
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 2.6e-16 90.9 172 39.5
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 4.4e-16 90.1 181 35.9
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 2.2e-15 87.8 135 33.3
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 7.0e-14 82.8 158 36.7
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 9.1e-14 82.4 158 37.3
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 9.1e-14 82.4 158 37.3
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.5e-13 81.6 158 36.7
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 3.5e-13 80.5 158 36.1
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 8.5e-12 75.9 75 52.0
Nn1g08105 Nelumbo nucifera HOM05D007281 ORTHO05D009241 2.6e-08 64.3 65 50.8
CDE04G1271 Ceratophyllum demersum HOM05D007281 ORTHO05D009241 4.1e-06 57.0 105 36.2


User provided reference genes

Program Settings