Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001947 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D111632 1.4e-36 155.6 72 100.0
Manes.09G167700 Manihot esculenta HOM05D000208 ORTHO05D000130 1.7e-08 62.4 55 56.4
vmacro04992 Vaccinium macrocarpon HOM05D000208 ORTHO05D000130 8.2e-08 60.1 33 78.8
Manes.08G120300 Manihot esculenta HOM05D000208 ORTHO05D000130 1.1e-07 59.7 53 56.6
CSS0047561 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 1.4e-07 59.3 33 78.8
Peaxi162Scf00037g00635 Petunia axillaris HOM05D000208 ORTHO05D000130 1.8e-07 58.9 33 78.8
AUR62000812 Chenopodium quinoa HOM05D000208 ORTHO05D000130 2.4e-07 58.5 33 75.8
AUR62005156 Chenopodium quinoa HOM05D000208 ORTHO05D000130 2.4e-07 58.5 33 75.8
FAN17G0678 Fragaria x ananassa HOM05D000208 ORTHO05D000130 2.4e-07 58.5 33 75.8
FAN22G0465 Fragaria x ananassa HOM05D000208 ORTHO05D000130 2.4e-07 58.5 33 75.8
CSS0019188 Camellia sinensis var. sinensis HOM05D000208 ORTHO05D000130 3.1e-07 58.2 33 75.8
Rhsim07G0184300 Rhododendron simsii HOM05D000208 ORTHO05D000130 3.1e-07 58.2 33 72.7
Rhsim07G0184400 Rhododendron simsii HOM05D000208 ORTHO05D000130 3.1e-07 58.2 33 72.7
vmacro04993 Vaccinium macrocarpon HOM05D000208 ORTHO05D000130 3.1e-07 58.2 33 75.8
Dinv40300 Davidia involucrata HOM05D000208 ORTHO05D000130 4.1e-07 57.8 53 54.7
Eucgr.H04498 Eucalyptus grandis HOM05D000208 ORTHO05D000130 4.1e-07 57.8 33 72.7
MD04G1204500 Malus domestica HOM05D000208 ORTHO05D000130 4.1e-07 57.8 32 78.1
Phvul.006G091400 Phaseolus vulgaris HOM05D000208 ORTHO05D000130 4.1e-07 57.8 42 57.1
Sabra05G0035000 Salix brachista HOM05D000208 ORTHO05D000130 5.3e-07 57.4 53 54.7
Sc06g0003270 Simmondsia chinensis HOM05D000208 ORTHO05D000130 5.3e-07 57.4 33 72.7
VMungo0540G1984 Vigna mungo HOM05D000208 ORTHO05D000130 6.9e-07 57.0 35 65.7
CiPaw.07G018600 Carya illinoinensis HOM05D000208 ORTHO05D000130 9.1e-07 56.6 32 75.0
Cc02_g33780 Coffea canephora HOM05D000208 ORTHO05D000130 9.1e-07 56.6 35 68.6
Nitab4.5_0003156g0110 Nicotiana tabacum HOM05D000208 ORTHO05D000130 9.1e-07 56.6 33 75.8
Oeu020848.1 Olea europaea HOM05D000208 ORTHO05D000130 9.1e-07 56.6 33 72.7
QL03p007189 Quercus lobata HOM05D000208 ORTHO05D000130 9.1e-07 56.6 53 52.8
Solyc01g099210.3 Solanum lycopersicum HOM05D000208 ORTHO05D000130 9.1e-07 56.6 33 72.7
EL10Ac4g09364 Beta vulgaris HOM05D000208 ORTHO05D000130 1.2e-06 56.2 34 70.6
DCAR_022174 Daucus carota HOM05D000208 ORTHO05D000130 1.2e-06 56.2 32 75.0
Eucgr.H04496 Eucalyptus grandis HOM05D000208 ORTHO05D000130 1.2e-06 56.2 33 69.7
Gohir.D13G111000 Gossypium hirsutum HOM05D000208 ORTHO05D000130 1.2e-06 56.2 53 52.8
Gorai.013G124500 Gossypium raimondii HOM05D000208 ORTHO05D000130 1.2e-06 56.2 53 52.8
Lalb_Chr15g0077221 Lupinus albus HOM05D000208 ORTHO05D000130 1.2e-06 56.2 36 63.9
RcHm_v2.0_Chr4g0404751 Rosa chinensis HOM05D000208 ORTHO05D000130 1.2e-06 56.2 33 69.7
Glyma.03G237300 Glycine max HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 69.7
MD12G1218300 Malus domestica HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 72.7
Prupe.6G324600 Prunus persica HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 72.7
QL03p007238 Quercus lobata HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 69.7
QL03p007271 Quercus lobata HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 69.7
QL03p007899 Quercus lobata HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 69.7
RcHm_v2.0_Chr3g0455121 Rosa chinensis HOM05D000208 ORTHO05D000130 1.5e-06 55.8 33 72.7
Aqoxy2G03365 Aquilegia oxysepala HOM05D000208 ORTHO05D000130 2.0e-06 55.5 33 69.7
EL10Ac4g09363 Beta vulgaris HOM05D000208 ORTHO05D000130 2.0e-06 55.5 34 70.6
CAN.G1034.37 Capsicum annuum HOM05D000208 ORTHO05D000130 2.0e-06 55.5 35 65.7
FvH4_4g09530 Fragaria vesca HOM05D000208 ORTHO05D000130 2.0e-06 55.5 33 72.7
FAN12G0558 Fragaria x ananassa HOM05D000208 ORTHO05D000130 2.0e-06 55.5 33 72.7
FAN12G4263 Fragaria x ananassa HOM05D000208 ORTHO05D000130 2.0e-06 55.5 33 72.7
Medtr7g113410 Medicago truncatula HOM05D000208 ORTHO05D000130 2.0e-06 55.5 35 65.7
Potri.005G032600 Populus trichocarpa HOM05D000208 ORTHO05D000130 2.0e-06 55.5 53 52.8
TPR.G18317 Trifolium pratense HOM05D000208 ORTHO05D000130 2.0e-06 55.5 45 57.8
AUR62000814 Chenopodium quinoa HOM05D000208 ORTHO05D000130 2.6e-06 55.1 33 72.7
Migut.N02072 Erythranthe guttata HOM05D000208 ORTHO05D000130 2.6e-06 55.1 30 80.0
Lj5A505G31 Lonicera japonica HOM05D000208 ORTHO05D000130 2.6e-06 55.1 37 64.9
Psat0s2197g0040 Pisum sativum HOM05D000208 ORTHO05D000130 2.6e-06 55.1 35 65.7
Potri.013G022000 Populus trichocarpa HOM05D000208 ORTHO05D000130 2.6e-06 55.1 53 52.8
QL03p007827 Quercus lobata HOM05D000208 ORTHO05D000130 2.6e-06 55.1 33 69.7
QL03p007848 Quercus lobata HOM05D000208 ORTHO05D000130 2.6e-06 55.1 33 69.7
Ah.06g189420 Amaranthus hybridus HOM05D000208 ORTHO05D000130 3.4e-06 54.7 47 57.4
EL10Ac4g09367 Beta vulgaris HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
CANSAT54G0474 Cannabis sativa HOM05D000208 ORTHO05D000130 3.4e-06 54.7 35 62.9
CANSAT80G1013 Cannabis sativa HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
Dinv40296 Davidia involucrata HOM05D000208 ORTHO05D000130 3.4e-06 54.7 53 50.9
Eucgr.L01433 Eucalyptus grandis HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 3.4e-06 54.7 32 68.8
MD09G1069500 Malus domestica HOM05D000208 ORTHO05D000130 3.4e-06 54.7 30 76.7
Nitab4.5_0000137g0100 Nicotiana tabacum HOM05D000208 ORTHO05D000130 3.4e-06 54.7 32 75.0
Prupe.6G324400 Prunus persica HOM05D000208 ORTHO05D000130 3.4e-06 54.7 53 52.8
Sopen01g042750 Solanum pennellii HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
Sopen01g042760 Solanum pennellii HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
PGSC0003DMG400024692 Solanum tuberosum HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 72.7
PGSC0003DMG400024693 Solanum tuberosum HOM05D000208 ORTHO05D000130 3.4e-06 54.7 33 69.7
MSTRG.27995 Avicennia marina HOM05D000208 ORTHO05D000130 4.5e-06 54.3 33 69.7
CANSAT54G1474 Cannabis sativa HOM05D000208 ORTHO05D000130 4.5e-06 54.3 53 50.9
Ciclev10000236m.g Citrus clementina HOM05D000208 ORTHO05D000130 4.5e-06 54.3 52 51.9
COL.COLO4_13453 Corchorus olitorius HOM05D000208 ORTHO05D000130 4.5e-06 54.3 33 66.7
Gohir.A13G108000 Gossypium hirsutum HOM05D000208 ORTHO05D000130 4.5e-06 54.3 53 50.9
Nitab4.5_0001937g0010 Nicotiana tabacum HOM05D000208 ORTHO05D000130 4.5e-06 54.3 33 66.7
PSO170G3370 Papaver somniferum HOM05D000208 ORTHO05D000130 4.5e-06 54.3 53 50.9
Sabra05G0035100 Salix brachista HOM05D000208 ORTHO05D000130 4.5e-06 54.3 53 50.9
TPR.G33228 Trifolium pratense HOM05D000208 ORTHO05D000130 4.5e-06 54.3 33 69.7
GSVIVG01005730001 Vitis vinifera HOM05D000208 ORTHO05D000130 4.5e-06 54.3 47 55.3
CANSAT54G1277 Cannabis sativa HOM05D000208 ORTHO05D000130 5.9e-06 53.9 50 52.0
CiPaw.08G164200 Carya illinoinensis HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
Ca_05813_v3 Cicer arietinum L. HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
Haze_04186 Corylus avellana HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 66.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 5.9e-06 53.9 35 62.9
CsaV3_2G005350 Cucumis sativus L. HOM05D000208 ORTHO05D000130 5.9e-06 53.9 35 62.9
Eucgr.H04495 Eucalyptus grandis HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
Peaxi162Scf00071g00650 Petunia axillaris HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
Potri.005G032700 Populus trichocarpa HOM05D000208 ORTHO05D000130 5.9e-06 53.9 53 50.9
RcHm_v2.0_Chr3g0455091 Rosa chinensis HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 66.7
PGSC0003DMG400010859 Solanum tuberosum HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
PGSC0003DMG400024689 Solanum tuberosum HOM05D000208 ORTHO05D000130 5.9e-06 53.9 33 69.7
CANSAT78G1704 Cannabis sativa HOM05D000208 ORTHO05D000130 7.7e-06 53.5 50 48.0
CsaV3_2G006370 Cucumis sativus L. HOM05D000208 ORTHO05D000130 7.7e-06 53.5 55 47.3
CsaV3_2G023200 Cucumis sativus L. HOM05D000208 ORTHO05D000130 7.7e-06 53.5 55 47.3
FAN27G1534 Fragaria x ananassa HOM05D000208 ORTHO05D000130 7.7e-06 53.5 52 48.1
Lj1g0010873 Lotus japonicus HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 66.7
Lalb_Chr25g0281001 Lupinus albus HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 63.6
Nitab4.5_0000137g0120 Nicotiana tabacum HOM05D000208 ORTHO05D000130 7.7e-06 53.5 28 82.1
Potri.005G032800 Populus trichocarpa HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 66.7
Sed0020231 Sechium edule HOM05D000208 ORTHO05D000130 7.7e-06 53.5 55 47.3
Solyc01g099190.4 Solanum lycopersicum HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 69.7
Sopen00g005150 Solanum pennellii HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 69.7
Sopen00g009120 Solanum pennellii HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 69.7
Sopen00g010700 Solanum pennellii HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 69.7
vmacro04990 Vaccinium macrocarpon HOM05D000208 ORTHO05D000130 7.7e-06 53.5 33 69.7


User provided reference genes

Program Settings