Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.1e-107 393.3 194 100.0
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-107 392.9 194 99.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.1e-75 287.0 183 79.2
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.3e-73 279.3 189 75.1
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.7e-73 277.7 188 75.0
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.0e-69 266.2 188 71.3
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.5e-69 265.0 190 68.9
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 5.9e-69 264.6 189 70.4
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.2e-68 262.7 187 72.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 8.5e-68 260.8 183 72.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.1e-67 260.4 187 71.1
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 7.2e-67 257.7 187 70.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 7.2e-67 257.7 187 71.1
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 9.4e-67 257.3 187 70.1
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 9.4e-67 257.3 187 70.1
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.6e-66 256.5 187 69.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.6e-66 256.5 184 70.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.1e-66 256.1 187 69.0
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.1e-66 256.1 196 68.4
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.7e-66 255.8 187 70.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.7e-66 255.8 193 67.9
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.6e-66 255.4 187 70.6
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 8.0e-66 254.2 187 69.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.4e-65 253.4 194 67.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.4e-65 253.4 188 68.6
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.3e-65 252.7 198 66.7
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.0e-65 252.3 190 68.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 6.8e-65 251.1 196 66.8
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 6.8e-65 251.1 196 67.3
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.8e-65 250.8 187 67.9
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 8.8e-65 250.8 197 65.5
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.2e-64 250.4 187 67.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.5e-64 250.0 182 68.1
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.5e-64 250.0 193 67.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 4.4e-64 248.4 182 67.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.4e-64 248.4 187 67.4
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.5e-64 247.7 187 67.9
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 7.5e-64 247.7 187 67.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.8e-64 247.3 185 67.6
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 9.8e-64 247.3 196 65.3
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.2e-63 246.1 187 65.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-63 246.1 198 64.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.8e-63 245.7 183 66.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 3.7e-63 245.4 187 69.5
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.8e-63 245.0 189 64.0
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.8e-63 245.0 230 58.3
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 8.3e-63 244.2 199 62.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 8.3e-63 244.2 199 62.8
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 8.3e-63 244.2 182 65.4
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 8.3e-63 244.2 190 66.3
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 8.3e-63 244.2 190 66.3
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.8e-62 243.0 187 66.8
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.4e-62 242.7 181 67.4
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.4e-62 242.7 188 67.6
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.1e-62 242.3 187 66.8
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 4.1e-62 241.9 182 67.6
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 5.4e-62 241.5 187 66.3
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 9.1e-62 240.7 187 64.7
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 9.1e-62 240.7 182 67.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-61 240.0 189 65.6
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-61 239.2 186 64.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.7e-61 239.2 184 65.2
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.5e-61 238.4 182 65.4
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 5.9e-61 238.0 200 61.5
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 7.7e-61 237.7 182 66.5
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.7e-61 237.7 187 64.2
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.3e-60 236.9 175 68.0
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.2e-60 236.1 185 65.9
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.2e-60 236.1 182 65.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 3.8e-60 235.3 182 64.8
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.0e-60 235.0 198 61.1
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.5e-60 234.6 191 63.9
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.1e-59 233.8 184 64.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.1e-59 233.8 190 64.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.1e-59 233.8 195 64.1
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.5e-59 233.4 185 65.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.9e-59 233.0 186 63.4
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.9e-59 233.0 182 65.4
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.9e-59 233.0 218 57.8
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.5e-59 232.6 185 63.8
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.5e-59 232.6 184 64.7
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.2e-59 232.3 185 64.9
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 4.2e-59 231.9 195 60.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 5.5e-59 231.5 193 62.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 5.5e-59 231.5 178 65.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.2e-58 230.3 191 62.8
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.2e-58 230.3 191 64.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.6e-58 229.9 186 64.5
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.6e-58 229.9 202 59.4
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.6e-58 229.9 187 59.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.1e-58 229.6 182 65.4
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.7e-58 229.2 190 63.2
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.6e-58 228.8 182 63.7
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 6.1e-58 228.0 186 62.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.0e-57 227.3 181 64.1
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.4e-57 226.9 183 65.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 4.0e-57 225.3 178 64.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 5.2e-57 224.9 178 63.5
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.5e-56 221.1 187 61.5
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.8e-56 220.7 186 58.1
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 3.7e-55 218.8 192 58.9
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 6.3e-55 218.0 189 58.7
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 6.3e-55 218.0 183 60.7
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 6.3e-55 218.0 188 60.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.8e-54 216.5 188 60.1
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.4e-54 216.1 183 59.6
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 7.0e-54 214.5 183 59.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 7.0e-54 214.5 178 63.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-53 213.8 183 59.6
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.0e-53 213.0 199 57.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.0e-53 213.0 183 61.2
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 3.5e-53 212.2 159 68.6
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.5e-53 211.8 188 57.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-52 210.7 183 59.6
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.8e-52 208.8 181 56.9
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 5.0e-52 208.4 197 57.9
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 5.0e-52 208.4 184 58.7
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 7.3e-51 204.5 188 58.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 3.6e-50 202.2 182 58.2
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.8e-49 199.9 178 57.9
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 5.2e-49 198.4 178 57.3
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 6.8e-49 198.0 178 57.9
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.2e-48 197.2 183 54.1
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.4e-46 190.3 186 54.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.4e-46 189.5 190 53.7
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.2e-42 177.2 180 50.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 8.9e-41 171.0 147 61.9
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.1e-38 162.2 189 48.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.2e-37 160.6 182 46.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.0e-37 159.8 189 45.5
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.5e-37 159.1 178 48.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.6e-37 158.7 178 48.3
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-36 157.1 178 47.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.0e-36 156.0 189 46.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.0e-36 155.2 180 46.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.5e-35 152.9 185 44.9
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.6e-34 150.2 183 42.6
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.8e-34 149.4 86 79.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 8.1e-34 147.9 183 47.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.8e-33 146.7 185 43.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-31 139.8 88 72.7
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.9e-30 136.7 83 72.3
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.1e-29 133.3 84 72.6
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.5e-29 132.5 74 82.4
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.0e-28 131.0 160 48.8
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 2.3e-28 129.8 130 53.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 2.3e-28 129.8 75 81.3
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 2.3e-28 129.8 88 70.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 5.1e-28 128.6 73 83.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 6.6e-28 128.3 185 41.6
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-26 124.0 69 85.5
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.1e-26 123.2 71 81.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.1e-25 120.9 75 76.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.3e-25 119.8 76 73.7
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.1e-25 119.4 280 32.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.1e-25 119.4 71 80.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.2e-25 118.6 72 77.8
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 6.8e-25 118.2 72 77.8
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.4e-24 115.9 72 76.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.7e-23 113.6 73 74.0
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.2e-23 113.2 186 36.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 8.6e-20 101.3 194 36.6
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.3e-19 99.0 73 67.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.6e-19 97.8 147 40.8
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.9e-17 91.7 51 80.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.4e-16 89.4 56 69.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 8.7e-12 74.7 54 66.7
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 9.6e-11 71.2 41 80.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.8e-10 69.7 45 68.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 8.1e-10 68.2 123 38.2
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.4e-09 67.4 43 69.8


User provided reference genes

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