Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.0e-149 530.8 262 100.0
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.0e-149 530.8 262 100.0
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.4e-118 429.1 262 80.9
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 3.5e-117 425.2 262 81.7
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 2.8e-114 415.6 262 79.0
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.4e-110 403.3 262 76.0
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.9e-107 392.9 262 76.3
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.2e-95 352.8 264 65.5
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 6.5e-95 351.3 264 65.2
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 3.9e-92 342.0 262 66.4
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 6.3e-90 334.7 262 65.3
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 6.3e-90 334.7 262 64.1
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 6.3e-90 334.7 262 63.7
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 9.1e-89 330.9 262 64.9
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 2.0e-88 329.7 267 64.8
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 3.8e-87 325.5 264 63.3
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 6.5e-87 324.7 263 64.3
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 9.4e-86 320.9 262 63.4
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.6e-85 320.1 266 60.5
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 7.9e-85 317.8 262 61.5
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.0e-84 315.8 262 61.1
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.8e-82 309.3 268 59.7
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 6.3e-82 308.1 264 60.6
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 4.5e-80 302.0 265 58.9
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 5.9e-80 301.6 264 58.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 7.7e-80 301.2 263 60.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.3e-79 300.4 241 62.2
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.2e-79 299.7 262 58.8
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 2.9e-79 299.3 262 57.6
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 3.8e-79 298.9 242 61.6
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.1e-78 297.4 268 58.2
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.9e-78 296.6 264 58.3
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.2e-78 295.4 262 56.1
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 4.2e-78 295.4 262 55.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.2e-77 293.9 262 55.0
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.2e-77 293.9 264 59.5
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.1e-77 293.1 255 58.8
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 2.7e-77 292.7 263 55.9
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 2.7e-77 292.7 263 55.9
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 2.7e-77 292.7 263 55.9
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 3.6e-77 292.4 263 56.3
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 6.1e-77 291.6 264 57.2
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 1.4e-76 290.4 263 58.2
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 3.9e-76 288.9 262 56.1
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 7.4e-75 284.6 261 55.2
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 2.8e-74 282.7 262 56.9
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.1e-73 280.8 268 55.6
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.8e-73 280.0 261 55.6
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 2.4e-73 279.6 263 56.7
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 4.1e-73 278.9 263 56.3
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 4.1e-73 278.9 262 55.0
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.3e-71 273.9 264 55.7
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.3e-71 273.9 261 55.9
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.2e-71 273.1 264 55.7
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 2.2e-71 273.1 262 55.0
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 3.8e-71 272.3 263 55.5
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 5.0e-71 271.9 262 53.8
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 6.5e-71 271.6 263 54.8
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 8.5e-71 271.2 262 55.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.1e-70 270.8 264 54.5
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 1.1e-70 270.8 262 55.7
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.5e-70 270.4 262 53.1
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.9e-70 270.0 288 53.5
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 9.4e-70 267.7 262 53.8
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 6.1e-69 265.0 269 53.9
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.3e-68 263.1 261 54.4
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 5.2e-68 261.9 264 54.2
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.0e-67 260.0 267 54.3
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 2.2e-66 256.5 198 63.1
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 6.3e-66 255.0 266 52.6
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 5.9e-64 248.4 283 48.4
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 5.5e-62 241.9 196 62.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 5.5e-62 241.9 253 52.6
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.2e-61 240.7 264 47.3
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 3.4e-59 232.6 267 48.3
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 3.7e-58 229.2 264 48.5
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.1e-57 227.6 317 45.7
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.2e-56 224.2 243 51.9
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.7e-55 220.3 264 47.0
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 2.9e-55 219.5 263 47.9
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 8.0e-53 211.5 202 56.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.4e-52 210.7 251 49.4
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.8e-52 210.3 275 46.5
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 1.5e-51 207.2 199 53.3
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 8.3e-50 201.4 193 54.4
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.2e-48 197.6 270 45.9
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.0e-44 184.5 197 48.2
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.3e-39 166.8 325 35.4
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.1e-36 157.9 131 60.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 6.8e-36 155.2 201 45.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.4e-33 147.5 211 44.1
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.0e-31 141.4 152 50.7
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.0e-23 114.8 143 44.8
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.0e-23 114.8 143 44.8
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 3.0e-23 113.2 167 38.9
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.6e-21 106.3 114 46.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 6.2e-21 105.5 269 29.4
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 3.4e-19 99.8 98 52.0
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.9e-18 96.7 96 51.0
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.8e-16 88.6 84 53.6
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.8e-13 80.1 96 45.8
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.6e-11 73.6 157 34.4
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 6.0e-08 62.4 54 53.7


User provided reference genes

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