Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 0.0e+00 1104.0 535 100.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.6e-209 731.9 523 70.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.0e-207 726.1 521 70.6
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.1e-192 675.6 513 67.4
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.4e-174 614.8 486 65.0
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-152 544.3 530 55.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.0e-139 499.6 520 50.2
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.0e-130 470.3 516 50.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.7e-130 468.0 539 48.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 2.2e-126 456.8 520 49.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.2e-125 453.0 514 50.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 2.1e-124 450.3 485 52.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.5e-122 444.1 515 48.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.5e-119 432.6 515 47.4
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.5e-119 432.6 517 48.0
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.0e-118 431.4 525 45.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 8.5e-118 428.3 496 48.4
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.9e-117 427.2 510 46.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.8e-115 420.6 543 44.4
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.3e-115 420.2 512 46.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.4e-112 411.0 522 46.2
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.0e-111 407.1 501 46.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.0e-110 404.8 513 46.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 3.8e-110 402.9 507 46.4
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-108 397.1 503 45.7
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.3e-107 393.7 510 46.3
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.0e-107 393.3 476 47.9
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-106 391.3 505 46.3
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.0e-106 390.6 499 44.9
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.0e-106 390.6 499 45.5
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.7e-106 389.0 499 45.3
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.2e-105 387.1 544 42.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 8.3e-105 385.2 517 44.1
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 3.1e-104 383.3 532 43.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.1e-104 382.9 505 45.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 5.0e-102 375.9 383 53.3
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.3e-101 373.2 517 43.1
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 5.2e-99 365.9 530 41.9
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.5e-98 364.4 501 41.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.4e-98 362.8 381 52.8
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.8e-97 360.1 523 41.3
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.4e-96 357.8 521 41.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.1e-96 356.7 503 41.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 4.1e-96 356.3 281 66.5
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 5.4e-96 355.9 586 38.9
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-95 354.8 526 42.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.7e-94 350.9 498 42.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-94 350.9 433 47.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 5.0e-94 349.4 524 40.1
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-93 348.2 500 40.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-93 348.2 500 40.4
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.5e-93 347.8 500 40.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 7.3e-93 345.5 388 48.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 7.3e-93 345.5 421 45.6
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.6e-92 343.2 523 40.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 4.7e-92 342.8 419 46.5
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.0e-91 341.7 540 38.1
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.4e-91 341.3 498 42.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.0e-91 339.7 491 39.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.0e-91 339.7 509 42.0
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 7.5e-90 335.5 502 41.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.7e-89 334.3 525 40.2
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.1e-88 331.6 501 40.3
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-88 331.6 507 41.8
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.2e-88 330.1 497 40.2
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 9.2e-88 328.6 511 41.1
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.2e-87 328.2 552 37.3
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.7e-86 324.3 537 38.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.0e-86 323.6 549 37.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.6e-84 316.6 520 38.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.2e-84 315.8 522 38.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.2e-84 315.8 522 38.1
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.1e-83 315.1 533 37.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.2e-83 312.8 396 46.2
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.6e-82 310.5 494 37.7
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.3e-81 308.1 539 37.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.7e-81 306.6 498 39.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.1e-80 305.1 495 37.8
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-80 304.7 453 41.3
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.4e-80 302.8 532 36.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-79 300.8 570 36.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.7e-79 300.4 453 41.3
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.6e-79 299.7 461 39.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-79 299.7 470 38.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.0e-78 298.5 393 41.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.0e-78 298.5 525 36.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.0e-78 298.5 523 36.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.3e-78 298.1 521 36.1
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.3e-78 297.4 450 40.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.0e-78 297.0 450 39.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.0e-78 297.0 530 37.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.9e-77 294.3 504 38.3
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.5e-77 293.9 439 42.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.3e-77 293.1 522 34.7
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 9.5e-77 292.0 402 42.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-76 291.6 504 36.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.8e-75 287.7 515 36.9
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.8e-74 282.7 476 37.0
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 7.5e-74 282.3 503 36.4
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 7.5e-74 282.3 520 35.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.3e-73 281.6 539 34.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.2e-73 280.8 516 33.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 4.9e-73 279.6 534 37.3
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 6.4e-73 279.3 399 42.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 5.4e-72 276.2 435 41.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.7e-71 273.9 506 33.0
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.8e-71 272.3 542 34.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.0e-70 271.9 523 35.2
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.3e-70 270.8 495 37.8
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 5.1e-70 269.6 524 34.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.1e-70 269.6 495 38.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.1e-70 269.6 478 35.6
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.6e-70 269.2 428 40.4
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 8.6e-70 268.9 494 35.4
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.5e-69 267.3 473 37.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.5e-69 267.3 455 36.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 5.6e-69 266.2 520 36.3
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.3e-69 265.8 443 37.7
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.3e-69 265.8 518 36.9
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.6e-68 264.6 386 40.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 2.8e-68 263.8 519 34.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 6.2e-68 262.7 531 33.1
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.2e-68 262.7 529 33.3
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.4e-67 260.8 482 33.4
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.8e-65 253.4 498 33.7
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 5.6e-61 239.6 526 34.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.6e-61 238.8 503 35.4
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.8e-59 234.6 537 29.6
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.4e-59 234.2 526 33.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.8e-58 229.6 535 33.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.8e-58 229.6 540 33.3
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 5.8e-58 229.6 387 36.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.7e-57 228.0 504 35.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.1e-56 225.3 525 33.1
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-56 224.9 537 34.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.6e-55 219.9 415 34.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.0e-55 219.5 259 47.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.7e-54 218.0 520 30.2
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.7e-54 218.0 526 32.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.8e-52 209.9 407 34.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.8e-52 209.9 521 30.7
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-50 204.1 250 45.2
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.8e-49 200.3 257 45.1
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.1e-46 189.9 278 40.6
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 7.4e-45 186.0 276 41.7
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-44 184.9 308 37.3
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.8e-44 184.1 379 33.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 6.2e-44 183.0 285 39.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-43 182.2 285 39.3
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.8e-43 181.4 263 41.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 5.3e-43 179.9 254 39.8
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 7.1e-40 169.5 269 37.2
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.8e-35 154.8 265 36.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 9.0e-35 152.5 266 34.2
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.3e-33 148.7 293 32.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.5e-31 140.6 211 42.7
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.3e-30 137.9 177 47.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 8.7e-30 136.0 511 27.0
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.3e-29 134.0 248 33.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.7e-29 133.3 247 39.3
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.4e-29 132.9 220 34.5
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 5.9e-26 123.2 243 31.3
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 5.0e-25 120.2 142 44.4
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-22 110.9 241 32.0
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.3e-21 107.1 253 31.2
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 5.7e-21 106.7 250 32.8
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.7e-20 105.1 279 30.1
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.2e-18 99.0 132 42.4
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.6e-18 97.8 148 40.5
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-15 89.0 101 39.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.7e-15 87.0 208 31.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 6.1e-15 86.7 194 35.1
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.0e-13 81.6 172 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 5.9e-10 70.1 506 23.1
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 8.5e-09 66.2 119 35.3
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 1.1e-08 65.9 89 44.9
Pp3c10_12370 Physcomitrium patens HOM05D003538 ORTHO05D004376 4.2e-08 63.9 382 23.0
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 7.2e-08 63.2 387 22.0


User provided reference genes

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