Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.6e-283 978.0 474 100.0
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.6e-240 835.9 477 86.0
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.3e-238 828.2 474 84.4
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.1e-228 795.0 474 81.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 4.3e-222 774.6 476 78.2
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.0e-219 765.8 474 77.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.0e-215 751.9 476 75.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 6.6e-215 750.7 483 75.4
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.6e-213 745.0 478 74.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 6.2e-213 744.2 480 74.4
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 8.1e-213 743.8 476 75.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 8.1e-213 743.8 479 73.5
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.1e-212 741.9 478 74.5
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 4.0e-212 741.5 475 74.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.6e-211 738.8 480 75.0
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 4.5e-211 738.0 477 74.2
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 7.6e-211 737.3 477 74.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 7.6e-211 737.3 475 74.1
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 9.9e-211 736.9 480 74.8
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.8e-210 734.9 476 76.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.9e-210 734.6 480 72.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.9e-209 732.6 474 74.5
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.4e-209 732.3 481 75.1
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.2e-209 731.9 478 73.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.2e-209 731.5 480 73.3
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 2.7e-208 728.8 480 75.4
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.0e-207 726.9 477 73.6
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.0e-207 726.9 500 71.4
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.3e-207 725.7 479 72.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.3e-206 721.5 481 72.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 7.4e-206 720.7 478 74.9
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-205 719.9 478 74.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 3.6e-205 718.4 479 72.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.8e-205 718.0 483 74.1
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.8e-204 716.1 480 73.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.8e-204 716.1 479 73.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.0e-204 714.9 474 72.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.0e-204 713.8 477 72.3
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.0e-204 713.8 478 72.6
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 9.0e-204 713.8 476 72.9
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.2e-203 713.4 477 72.1
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 4.5e-203 711.4 477 71.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.9e-203 710.3 479 71.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.9e-203 710.3 478 72.4
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.4e-201 706.4 517 67.5
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.2e-201 704.9 481 73.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 7.1e-201 704.1 481 71.5
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 9.3e-201 703.7 519 66.9
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.2e-200 703.4 473 71.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.7e-200 702.2 486 69.8
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.7e-200 702.2 484 71.9
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.7e-200 702.2 517 67.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.7e-200 702.2 517 66.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.3e-199 699.9 481 72.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.8e-199 699.5 475 72.0
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-199 699.1 475 70.3
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.3e-199 699.1 518 67.4
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.7e-199 697.2 481 71.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.9e-198 696.0 541 66.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 3.3e-198 695.3 485 72.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 4.3e-198 694.9 543 63.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.4e-198 694.1 481 70.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.3e-197 693.3 434 76.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.1e-197 692.6 517 67.5
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.8e-197 692.2 478 70.1
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.4e-196 689.9 480 70.2
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.4e-195 685.3 515 65.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.4e-195 685.3 478 69.0
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.5e-195 684.9 527 64.9
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.3e-194 683.3 500 67.6
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-194 682.9 513 65.9
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.7e-194 682.9 483 70.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.1e-193 680.2 475 67.8
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.4e-193 679.9 496 67.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.5e-193 679.1 478 68.2
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.8e-191 672.9 388 84.0
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.8e-188 662.9 475 69.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 8.5e-186 654.1 475 68.6
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.1e-185 653.7 482 67.8
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 3.2e-185 652.1 437 72.1
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.2e-185 651.0 480 65.4
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.2e-185 651.0 482 67.0
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.6e-184 649.8 479 67.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.7e-184 649.0 388 82.0
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.8e-183 646.4 476 64.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 7.4e-182 641.0 480 65.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 9.7e-182 640.6 478 65.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.7e-182 640.6 480 65.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.7e-182 640.6 434 69.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.2e-181 639.4 481 63.8
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.6e-179 632.5 480 63.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 5.5e-177 624.8 437 68.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.1e-176 622.9 475 64.0
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.7e-176 622.5 388 77.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.0e-175 620.5 483 62.9
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.4e-174 614.4 486 62.3
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 6.3e-173 611.3 476 62.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-172 610.5 476 62.6
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.8e-172 609.8 476 62.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 2.4e-172 609.4 476 62.0
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 6.9e-172 607.8 483 62.9
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.9e-170 602.4 476 61.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 5.0e-170 601.7 482 62.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 5.0e-170 601.7 475 62.1
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 4.2e-169 598.6 477 61.6
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 9.4e-169 597.4 478 61.5
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.2e-168 597.0 398 72.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-167 593.6 479 61.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.4e-167 593.6 479 61.0
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.9e-167 592.0 475 60.8
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-166 590.1 479 61.2
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.6e-166 589.3 479 60.1
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.6e-166 589.3 479 60.1
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-163 580.5 392 71.7
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 7.7e-163 577.8 478 59.0
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.1e-160 568.2 458 61.8
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.5e-158 563.5 396 69.7
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 5.7e-158 561.6 438 63.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.1e-156 557.4 438 63.7
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-154 550.1 498 56.0
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.5e-153 546.2 347 74.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.5e-153 546.2 407 67.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.3e-151 539.7 502 54.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 4.0e-151 538.9 437 63.2
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.4e-150 535.8 290 85.5
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-148 530.4 509 54.8
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.5e-142 510.4 394 62.2
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.8e-141 506.1 478 54.6
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 5.4e-140 501.9 283 81.6
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.0e-140 501.5 287 82.6
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.5e-137 493.0 454 55.5
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.9e-131 471.9 306 69.0
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.9e-124 450.3 302 69.5
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 9.2e-116 421.4 287 67.9
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.6e-115 419.1 296 66.9
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.5e-113 411.4 298 62.1
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.2e-112 411.0 564 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.1e-112 410.2 531 44.6
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.0e-110 403.7 297 71.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 5.6e-105 385.6 304 58.9
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 8.4e-101 371.7 475 42.5
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.7e-99 366.7 539 41.0
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.0e-86 323.9 372 50.3
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 3.2e-68 263.5 205 64.9
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 4.2e-68 263.1 434 38.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 3.7e-64 250.0 189 66.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.5e-52 210.7 179 59.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 2.0e-46 191.0 193 55.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.7e-41 172.2 95 81.1
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-40 169.9 153 55.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-39 168.7 93 80.6
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.1e-39 165.6 95 77.9
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.2e-38 165.2 144 59.0
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.2e-38 165.2 144 59.0
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.7e-37 161.4 187 50.8
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.0e-37 159.8 127 55.1
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.5e-36 158.3 164 55.5
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 5.5e-36 156.4 86 84.9
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 5.5e-36 156.4 86 84.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.3e-34 151.0 179 48.6
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.3e-34 151.0 111 69.4
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 4.8e-32 143.3 152 52.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.5e-28 131.7 138 50.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 9.5e-28 129.0 158 42.4
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 7.0e-15 86.3 68 66.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.5e-12 78.6 45 75.6


User provided reference genes

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